Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g425 ATGATCAGTGTAGGGTATCAGCCGTCGCCGTCGAGAACGATTTACAGCGATAGATTCATCCCCAGCAGAACAGGTTCCAATTTTGCGCTCTTCGACATCTCCCCGTTGGCTAACTCGCCGGCGGAGGGGCGAGAGGATGGCTCTGGCGCGTATGCGACGTTATTGGATGGGAAGAATTCTTCTGTGTATCCGTCGAGCCGGAATATTTTTCGGTACAAGACGGAGACTCGGCAGTCGATGCACTCGCTGTCGCCTTTCGGGTTTGAAGATGCATTGCCGGGCGTGAGTCATGGCCCGGTCAAGGCAGCACGGAAGGTTCCTCGATCGCCTTATAAGGTTTTGGATGCTCCGGCATTACAAGATGATTTTTATCTGAATCTCGTTGATTGGTCCGCGCATAATGTGTTGGCAGTTGGGTTGGGCAATTGTGTCTATTTATGGAATGCTTGTAGTAGCAAGGTGACAAAGTTGTGTGACCTGGGAATGGATGTAAGTGTCTGTTCAGTAGGCTGGGCGCAGCGTGGCACACATCTTGCTGTTGGAACAAGTAATGGAAAACTCCAGATTTGGGATGCATCTCGCTGCAAGAGAGTGCGAACTATGGAGGGTCATCGGTTACGTATTGGAGCTCTAGCCTGGAGCTCATCCATGTTGTCTTCAGGTAGTCGGGATAAAACAATTCTTCAACGTGATATACGTGCTCAGGATGATTTTGTTAATAAGCTCGCTGGACACAAGTCAGAGGTTTGTGGATTGAAGTGGTCTTATGATAACCGTGAGTTAGCATCAGGAGGAAATGATAATAGACTTTTTGTTTGGAATCAACATTCAACTCAACCTGTCCTAAAATACTGTGAGCATACAGCAGCTGTAAAAGCCATAGCATGGTCCCCCCATCTTCATGGTCTTCTTGCATCTGGGGGTGGTACAGCAGACCGCTGCATTCGATTCTGGAATACAACCACTAACTCACACCTGAGCTGCATGGACACCGGCAGTCAGGTATGCAACCTTGTCTGGTCTAAAAATGTCAATGAACTTGTAAGCACCCATGGGTACTCCCAGAATCAAATAATAGTTTGGAGATATCCTACCATGTCAAAGTTGGCAACCCTTACCGGCCATACGTATAGAGTTCTTTATCTTGCCATCTCCCCCGATGGACAGACAATCGTCACAGGAGCAGGAGATGAAACACTTCGGTTTTGGAATGTCTTCCCTTCTCCCAAATCACAGAATACTGATAGTGAAATTGGAGCATCATCCCTTGGAAGAACTCAAATCCGATGA 1290 47.67 MISVGYQPSPSRTIYSDRFIPSRTGSNFALFDISPLANSPAEGREDGSGAYATLLDGKNSSVYPSSRNIFRYKTETRQSMHSLSPFGFEDALPGVSHGPVKAARKVPRSPYKVLDAPALQDDFYLNLVDWSAHNVLAVGLGNCVYLWNACSSKVTKLCDLGMDVSVCSVGWAQRGTHLAVGTSNGKLQIWDASRCKRVRTMEGHRLRIGALAWSSSMLSSGSRDKTILQRDIRAQDDFVNKLAGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNSHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTYRVLYLAISPDGQTIVTGAGDETLRFWNVFPSPKSQNTDSEIGASSLGRTQIR* 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4234842 4244059 - Vvi2g425 Vvi2g425 783124

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g425 429 Pfam Anaphase-promoting complex subunit 4 WD40 domain 159 215 IPR024977 -
Vvi2g425 429 SMART WD40_4 107 148 IPR001680 GO:0005515
Vvi2g425 429 SMART WD40_4 365 404 IPR001680 GO:0005515
Vvi2g425 429 SMART WD40_4 151 191 IPR001680 GO:0005515
Vvi2g425 429 SMART WD40_4 194 231 IPR001680 GO:0005515
Vvi2g425 429 SMART WD40_4 235 274 IPR001680 GO:0005515
Vvi2g425 429 SMART WD40_4 277 319 IPR001680 GO:0005515
Vvi2g425 429 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 242 274 - -
Vvi2g425 429 ProSiteProfiles Trp-Asp (WD) repeats profile. 242 283 IPR001680 GO:0005515
Vvi2g425 429 MobiDBLite consensus disorder prediction 410 429 - -
Vvi2g425 429 SUPERFAMILY WD40 repeat-like 119 405 IPR036322 GO:0005515
Vvi2g425 429 ProSiteProfiles Trp-Asp (WD) repeats profile. 159 200 IPR001680 GO:0005515
Vvi2g425 429 Pfam WD domain, G-beta repeat 279 319 IPR001680 GO:0005515
Vvi2g425 429 Pfam WD domain, G-beta repeat 368 404 IPR001680 GO:0005515
Vvi2g425 429 Pfam WD domain, G-beta repeat 240 274 IPR001680 GO:0005515
Vvi2g425 429 PANTHER PROTEIN FIZZY-RELATED 1 6 429 - -
Vvi2g425 429 ProSitePatterns Trp-Asp (WD) repeats signature. 391 405 IPR019775 -
Vvi2g425 429 ProSiteProfiles Trp-Asp (WD) repeats profile. 372 405 IPR001680 GO:0005515
Vvi2g425 429 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 6 429 IPR033010 GO:0010997|GO:0097027|GO:1904668
Vvi2g425 429 Gene3D - 100 409 IPR015943 GO:0005515
Vvi2g425 429 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 372 405 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g425 K03364 CDH1, FZR1; cell division cycle 20-like protein 1, cofactor of APC complex - vvi:100256403 867.455
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g425 . . . . . . . Bma14g00575 . . Cma02g01496 Cma15g01185 Car02g01258 Car15g01073 . . Cpe05g00294 . . . . . . . . . . . . . . . . Cone6ag0735 Cone9ag0739 . Csa05g00338 Chy09g01171 . Blo03g00379 . Bda07g00507 . . Bpe11g00694 . . . Cmo02g01537 Cmo15g01249 . . . . . Cpe13g00188 Bhi12g00333 . . Lac11g2159 Hepe06g1599 . Lcy12g1717 Cla01g00318 Cam01g0328 Cec01g0320 Cco01g0337 Clacu01g0330 Cmu01g0314 Cre09g2197 Lsi09g00323 . . Cme09g01704
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006983 1 1 1 1 1 1 4 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 37