Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g431 ATGACCGCTATGGATGAACTGCCTCTGGTTCTTGTCCATGTCTTGCCGCCATTCGAGATCCCGTTCAAGGGCCGACTTCAGAGTCGATTCCAACTCATCGACTCCTCCGATTCAACTTTCTCCCCACACGCCAGCGTCCTGCTCTGTGTTGGCCCCGCTCCGGTCAGTTCCGACACCCTCCGCCACCTCCCCTCTCTCCAGTGCATCGTCGGCTCAAGCGCCGGCGTAGACCATATTGACCTAGAGGAGTGCCGCCGCCGCGGCATCACTGTCACCAATGCTGGCTCCTCCTTCTGCGAGGACGGCGCTGATTTCGCCATCGGGCTTCTGATCGATGTTCTCCGACGGATATCGGCCGCCGATCGGTACGTTCGAGCCGGTTTGTGGCCGATGAAGGGAGATTACCCACTAGGTTCCAAGTTAGGGGGAAAGCGAGTTGGAATTGTTGGACTGGGGAAAATTGGCTCCGAAATTGCCAAAAGGCTCGTGGCATTTGGCTGCAGAATCGCCTACAACTCCAGGAATAAAAAGTCATCAGTTTCATTCCCATACTATGCAAATATTTGCAACCTTGCTGCTAATATCATCATCAATGTTGGTCGCGGGGGTCTCATCAATGAAAAGGAATTGCCTGATGTGCCAAAAGAGCTATTTGAATTGGAGAATGTTGTGCTATCTCCACATAAAGCTATTGCGACCCTAGAGTCCTTAGCATCATTGCAAGAGCTGATCGTGGGCAACTTGGAGGCATTCTTCTCTAATAAACCTTTGCTTTCCCCAATAAACCTTGACTAA 795 51.82 MTAMDELPLVLVHVLPPFEIPFKGRLQSRFQLIDSSDSTFSPHASVLLCVGPAPVSSDTLRHLPSLQCIVGSSAGVDHIDLEECRRRGITVTNAGSSFCEDGADFAIGLLIDVLRRISAADRYVRAGLWPMKGDYPLGSKLGGKRVGIVGLGKIGSEIAKRLVAFGCRIAYNSRNKKSSVSFPYYANICNLAANIIINVGRGGLINEKELPDVPKELFELENVVLSPHKAIATLESLASLQELIVGNLEAFFSNKPLLSPINLD* 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4296412 4298771 - Vvi2g431 Vvi2g431 783130

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g431 264 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 42 262 IPR006139 GO:0016616|GO:0051287
Vvi2g431 264 PANTHER 2-HYDROXYACID DEHYDROGENASE-RELATED 4 194 - -
Vvi2g431 264 PANTHER 2-HYDROXYACID DEHYDROGENASE-RELATED 211 263 - -
Vvi2g431 264 PANTHER GLYOXYLATE/HYDROXYPYRUVATE REDUCTASE HPR3 211 263 - -
Vvi2g431 264 PANTHER GLYOXYLATE/HYDROXYPYRUVATE REDUCTASE HPR3 4 194 - -
Vvi2g431 264 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 103 230 IPR036291 -
Vvi2g431 264 SUPERFAMILY Formate/glycerate dehydrogenase catalytic domain-like 22 134 - -
Vvi2g431 264 Gene3D - 99 194 - -
Vvi2g431 264 Gene3D - 211 233 - -
Vvi2g431 264 Gene3D - 234 256 - -
Vvi2g431 264 Gene3D - 41 98 - -
Vvi2g431 264 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 107 180 IPR006140 GO:0051287
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g431 K15919 HPR2_3; glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81] - vvi:100247964 472.241
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g431 . . . . . . . Bma14g00574 Cmo06g01148 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe11g00695 . . . . . Cma06g01120 . . . Cpe08g00498 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000708 2 4 2 3 2 4 2 4 3 4 2 5 3 4 4 3 4 3 3 3 5 3 3 4 3 4 5 3 1 2 97