Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g434 ATGGAAAATATGGACGGGTTCATCTCAGCAAGTCCAGAAAAGATGTTGCCTCTACTAACAACGCATTCACCCGATTTCCTAGGGTTGCACCAGGAAATGGGATTCTGGAAAGAATCAAATTTCGGAAAGGGGGTGATCATTGGAGTATTGGACTCTGGAGTGTTGCCTAGCCATCCTTCATTTAGCGGTGAAGGAATTCCACCTCCACCAGCTAAATGGAAAGGAAGCTGTGAGTTCATGGCATCAGAATGTAACAACAAACTAATTGGTGCAAGGTCTTTCAATTTGGGATGGCACCTTACGCTCACTTGGCAATATACAAGGTGTGATCCTGCAGTTCCATTTTTCCAGGACAATATAGCGGTGGGCTCATTTGCAGCAATGCAAAAGGGAATTTTTGTGAGCTGTTCAGCTGGGAATTCTGGCCCTTTCAACACCACTCTATCTAACGAAGCCCCATGGATTCTCACTGTTGGAGCCAGTTCCATTGATAGAACCATCAAAGCTGCTGCAAAACTTGGAAATGGGGAACAATTTGATGGTGAAACCCTTTTCCAGCCCAGTGACTTCCCAGCCACACAATTGCCTCTCGTTTATGCTGGAATGAATGGTAAACCAGAGTCTGCAGTATCCTATATAAACTCAACCGCAACACCAACAGCAGCAATCTTGTTTAAAGGAACCGTAATTGGCAACCCATTGTCTCCCGCTATTACTTCCTTCTCTTCCAGAGGCCCCAGCTTTGCAAGTCCAGGAATTCTGAAACCGGATATTATTGGGCCTGGGGTGAGCATCCTAGCTGCATGGCCCTTCCCTCTTGACAATAACATAAATTCAAAATCCACATTCAACATAATCTCTGGCACATCAATACTTCTTCCTGCAGACATATTTGCTACTGGCGCAGGTCATGTTAACCCATCAAGAGCCAATGATCCAGGCTTGGTTTATGATATCGAACCTGATGACTATATACCTTATTTATGTGGCCTGGGCTACACAGATACTGAAGTTGGGATCCTTGCACATCGATCCATCAAATGCTCAGAAGAATCCAGCATTCCTGAAGGAGAGCTAAACTACCCTTCATTTTCTGTTGCACTGGGACCACCTCAGACTTTCACGCGGACTGTGACAAATGTTGGTGAGGCCTATTCATCTTACACCGTAACGGCGATTGTACCACAAGGAGTTGATGTGAGTGTCAATCCTGATAAGCTTTACTTCTCAAAGGTGAACCAGAAGCTGACGTATTCAGTGACATTCAGCCACAATAGCTCCAGCGGGAAAAGCAGCAAATTTGCTCAAGGATATCTCAAATGGGTTTCTGGAAAACACTCTGTTGGGAGTCCAATCTCCATTATGTTCAAGTGA 1374 44.98 MENMDGFISASPEKMLPLLTTHSPDFLGLHQEMGFWKESNFGKGVIIGVLDSGVLPSHPSFSGEGIPPPPAKWKGSCEFMASECNNKLIGARSFNLGWHLTLTWQYTRCDPAVPFFQDNIAVGSFAAMQKGIFVSCSAGNSGPFNTTLSNEAPWILTVGASSIDRTIKAAAKLGNGEQFDGETLFQPSDFPATQLPLVYAGMNGKPESAVSYINSTATPTAAILFKGTVIGNPLSPAITSFSSRGPSFASPGILKPDIIGPGVSILAAWPFPLDNNINSKSTFNIISGTSILLPADIFATGAGHVNPSRANDPGLVYDIEPDDYIPYLCGLGYTDTEVGILAHRSIKCSEESSIPEGELNYPSFSVALGPPQTFTRTVTNVGEAYSSYTVTAIVPQGVDVSVNPDKLYFSKVNQKLTYSVTFSHNSSSGKSSKFAQGYLKWVSGKHSVGSPISIMFK* 458
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4329209 4331242 - Vvi2g434 Vvi2g434 783133

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g434 457 Pfam Subtilase family 124 290 IPR000209 GO:0006508|GO:0008236
Vvi2g434 457 PRINTS Subtilisin serine protease family (S8) signature 42 61 IPR015500 -
Vvi2g434 457 PRINTS Subtilisin serine protease family (S8) signature 226 242 IPR015500 -
Vvi2g434 457 Gene3D - 164 201 - -
Vvi2g434 457 Gene3D - 208 231 - -
Vvi2g434 457 PANTHER SERINE PROTEINASE 1, PUTATIVE-RELATED 112 210 - -
Vvi2g434 457 PANTHER SERINE PROTEINASE 1, PUTATIVE-RELATED 1 100 - -
Vvi2g434 457 PANTHER SERINE PROTEINASE 1, PUTATIVE-RELATED 211 294 - -
Vvi2g434 457 PANTHER SERINE PROTEINASE 1, PUTATIVE-RELATED 293 456 - -
Vvi2g434 457 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 112 210 IPR045051 -
Vvi2g434 457 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 293 456 IPR045051 -
Vvi2g434 457 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 211 294 IPR045051 -
Vvi2g434 457 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 1 100 IPR045051 -
Vvi2g434 457 ProSitePatterns Serine proteases, subtilase family, aspartic acid active site. 47 58 IPR023827 -
Vvi2g434 457 Gene3D Peptidase S8/S53 domain 232 291 IPR036852 GO:0004252|GO:0006508
Vvi2g434 457 Gene3D Peptidase S8/S53 domain 20 109 IPR036852 GO:0004252|GO:0006508
Vvi2g434 457 Gene3D Peptidase S8/S53 domain 114 163 IPR036852 GO:0004252|GO:0006508
Vvi2g434 457 Gene3D Peptidase S8/S53 domain 294 324 IPR036852 GO:0004252|GO:0006508
Vvi2g434 457 Pfam Fibronectin type-III domain 358 454 IPR041469 -
Vvi2g434 457 SUPERFAMILY Subtilisin-like 18 315 IPR036852 GO:0004252|GO:0006508
Vvi2g434 457 Gene3D - 328 456 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g434 - - - vvi:109121849 468.388
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi2g434 Vvi15g496 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g434 . . . . . . . . . Cmo16g01045 Cma02g01498 . Car02g01261 . . . Cpe05g00291 . . . . . . . . . . . . . . Cone8ag0344 . . . . Csa05g00344 Chy09g01163 . . . Bda07g00509 . . . . . . Cmo02g01539 . . . . . . . Bhi12g00343 . . . Hepe06g1605 . Lcy12g1726 . . . . . . . Lsi09g00337 . . Cme09g01695
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002315 3 2 1 2 2 2 1 1 3 3 2 2 1 2 2 1 2 3 1 1 2 8 1 0 2 5 1 1 2 3 62