Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g435 ATGGAAGAGAAGGATGGGTTTGTTTCAGCTCGACCGCAAAGAATATTGCCCTTGCATACAACTCATAGCCCTAGTTTCTTGGGGTTGCACCAAGAGTTAGGTTTCTGGAAAGGATCAAACTACGGCAAGGGGGTTATTATTGGAGTTCTGGACACAGGACTATTCCCTGACCATCCTTCATTTAGCGATGAAGGACTACCACCTCCACCAGCTAAATGGAAAGGAAAGTGTGACTTCAATTGGACGTCCTGCAATAACAAAATCATCGGAGCAAGAAATTTTGATAGCGGAGCAGAGGCTGTTCCACCCATTGATGAAGAAGGCCACGGCACCCACACCGCAAGCACAGCTGCAGGGAATTTTGTGCCAAACGCGGATGCGCTCGGGAATGCCAATGGCACGGCTGTTGGCATGGCACCGTTTGCTCACTTGGCAATTTATAAAGTATGTTCCGAATTTGGTTGCGCGGACACTGACATATTAGCAGCACTTGACACTGCCATAGAGGATGGTGTTGATGTACTTTCCCTCTCCCTGGGTGGAGGCTCTGCTCCCTTTTTCGCAGATTCAATTGCACTAGGTGCTTTTTCTGCTATTCAAAAAGGGATATTTGTAAGCTGTTCCGCTGGTAATTCAGGCCCACTCAATGGATCTTTATCAAACGAGGCACCCTGGATACTTACCGTGGGTGCAAGCACCATAGACAGAAAGATAATGGCTACAGCGACGCTTGGAAATGGGGAAGAATTTGATGGCGAATCGCTTTTCCAGCCAAGTGATTTCCCTTCAACATTACTACCTCTCGTGTACGCGGGCGCAAATGGTAATGCCTCCTTGGAAAGCCCTGGTATCTTGAAACCAGACATTATAGGCCCTGCGGCATTGCGGCTTTGA 894 48.21 MEEKDGFVSARPQRILPLHTTHSPSFLGLHQELGFWKGSNYGKGVIIGVLDTGLFPDHPSFSDEGLPPPPAKWKGKCDFNWTSCNNKIIGARNFDSGAEAVPPIDEEGHGTHTASTAAGNFVPNADALGNANGTAVGMAPFAHLAIYKVCSEFGCADTDILAALDTAIEDGVDVLSLSLGGGSAPFFADSIALGAFSAIQKGIFVSCSAGNSGPLNGSLSNEAPWILTVGASTIDRKIMATATLGNGEEFDGESLFQPSDFPSTLLPLVYAGANGNASLESPGILKPDIIGPAALRL* 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4333157 4334766 - Vvi2g435 Vvi2g435 783134

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g435 297 Pfam Subtilase family 42 245 IPR000209 GO:0006508|GO:0008236
Vvi2g435 297 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 1 275 IPR045051 -
Vvi2g435 297 SUPERFAMILY Subtilisin-like 18 294 IPR036852 GO:0004252|GO:0006508
Vvi2g435 297 ProSitePatterns Serine proteases, subtilase family, aspartic acid active site. 47 58 IPR023827 -
Vvi2g435 297 Gene3D Peptidase S8/S53 domain 44 234 IPR036852 GO:0004252|GO:0006508
Vvi2g435 297 Gene3D - 235 278 - -
Vvi2g435 297 ProSiteProfiles Serine proteases, subtilase domain profile. 26 297 - -
Vvi2g435 297 PANTHER SUBTILISIN-LIKE PROTEASE SBT1.7 1 275 - -
Vvi2g435 297 PRINTS Subtilisin serine protease family (S8) signature 42 61 IPR015500 -
Vvi2g435 297 PRINTS Subtilisin serine protease family (S8) signature 105 118 IPR015500 -
Vvi2g435 297 CDD Peptidases_S8_3 18 240 IPR034197 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g435 - - - vvi:100242816 552.362
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi2g435 Vvi15g498 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g435 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe11g00696 . . . . . . . . . . . . . . . . . . Cla01g00326 Cam01g0337 Cec01g0331 Cco01g0344 Clacu01g0341 Cmu01g0321 Cre09g2189 Lsi09g00341 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002315 3 2 1 2 2 2 1 1 3 3 2 2 1 2 2 1 2 3 1 1 2 8 1 0 2 5 1 1 2 3 62