Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g436 ATGGGGATCGTCTTTCTACTTGCTTTCATTTGTATGTCCGGATTCTCTCCTGCAATAGCGGATAAAACGCAGTTCAAAACCTATGTTATCCATGTCAAGCACCCAAATAATGAAGAAGTTGCAGAAGCACAAAATCTAGAAAGCTGGTACAAGTCTTTTATGCCGACTAGCATGACCGCAGACTCAGACCAGCAACCTCGCATTGATCCAACCTTGGAAAGGGTGTCATTATCGGAGTATTGGACACAGGAGTATTACCAGACCATGTTTCATTTAGCGATGCGGGAATGCCACCTCCACCTGCGAAATGGAAAGGGAAGTGTGAATTCAAAGGGACGTCCTGCAATAACAAGCTCATTGGTGCTAGAAATTTTGACAGCGAGACTGCGCTTGACGCGGCCATTGAGGATGGCCCCATGGATTCTTACCGTGGCTGCAAGCACCATGGATAGAAGCATAAAGGCTATGTCCGCAGCCCCTGAAATCACTTCCTTCTCGTCCAGAGGACCTAGCTTGGCAAGCCCTGGTATTTTGAAGCCTGACATAACCGGCCCTGGTGTGAGCGTTCTAGCAGCCTGGCCCAGCTCTGTAGACAACAGGACTGACTCAAAACCTGCCGATGTCTTTGCCGTAGGTGCCGGGCATGTCAACCCTTCAAGAGCAAATGATCCTGGACTCATTTACGACATCCAGCCAAATGATTACATACCCTACTTATGTGGCTTGGGTTACAATGACACTCAAGTAAGAGCTATTATCCGACACAAAGTGCAGTGCTCCAAGGAGTCAAGCATACCCGAGGCACAGCTAAATTATCCTTCATTTTCTGTTGCAATGGGGTCTAGTGCTTTGAAACTTCAGAGGACGGTTACAAATGTGGGCGAGGCTAAAGCATCTTACATCGTCAAGATTTCTGCACCTCAGGGAGTGGATGTGAGTGTCAAGCCTCGTAAGCTCGACTTCACCCAAACTAACCAGAAGAAGACATATACAGTGACCTTTGAGAGAAAAGATGATGGGAAGACCGGCAGCAAGCCATTTGCTCAAGGGTTTCTGGAATGGGTCTCTGCAAAACACTCAGTCCGAAGCCCAATTTCTGTGAAGTTTGAATGA 1113 47.53 MGIVFLLAFICMSGFSPAIADKTQFKTYVIHVKHPNNEEVAEAQNLESWYKSFMPTSMTADSDQQPRIDPTLERVSLSEYWTQEYYQTMFHLAMRECHLHLRNGKGSVNSKGRPAITSSLVLEILTARLRLTRPLRMAPWILTVAASTMDRSIKAMSAAPEITSFSSRGPSLASPGILKPDITGPGVSVLAAWPSSVDNRTDSKPADVFAVGAGHVNPSRANDPGLIYDIQPNDYIPYLCGLGYNDTQVRAIIRHKVQCSKESSIPEAQLNYPSFSVAMGSSALKLQRTVTNVGEAKASYIVKISAPQGVDVSVKPRKLDFTQTNQKKTYTVTFERKDDGKTGSKPFAQGFLEWVSAKHSVRSPISVKFE* 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4337076 4339299 - Vvi2g436 Vvi2g436 783135

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g436 370 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 156 202 IPR045051 -
Vvi2g436 370 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 204 367 IPR045051 -
Vvi2g436 370 Gene3D Peptidase S8/S53 domain 76 238 IPR036852 GO:0004252|GO:0006508
Vvi2g436 370 Pfam Fibronectin type-III domain 269 367 IPR041469 -
Vvi2g436 370 PANTHER SERINE PROTEINASE 1, PUTATIVE-RELATED 204 367 - -
Vvi2g436 370 PANTHER SERINE PROTEINASE 1, PUTATIVE-RELATED 156 202 - -
Vvi2g436 370 SUPERFAMILY Subtilisin-like 138 225 IPR036852 GO:0004252|GO:0006508
Vvi2g436 370 Gene3D - 239 369 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g436 - - - vvi:100253079 345.51
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi2g436 Vvi16g561 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g436 . . . . . . . . . Cmo16g01025 . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy09g01159 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi09g00343 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0018742 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 2 5