Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g437 ATGCCACCCCCACCTGCTAAATGGACTGGGTTGTGTGAATTCAACAAGTCCGGCGGCTGCAGTAACAAGGTCATTGGTGCAAGAAATTTTGAAAGCGGGAGTAAAGGAATGCCACCATTTGATGAAGGGGGCCACGGCAGCCACACGGCAAGCATTGCTGCTGGAAATTTTGTGAAACACGCCAATGTTCTTGGGAATGCCAAGGGCACCGCCGCTGGCGTTGCGCCTGGTGCTCACTTAGCGATTTATAAAATATGCACCGACGAGGGCTGTGCCGGAGCTGATATATTAGCTGCATTTGATGCTGCCATTGCCGATGGTGTTGATGTGCTTTCCGTTTCCGTAGGTCAAAAATCTACTCCTTTCTATGACGACGCAATTGCCGTCGGTGCTTTTGCGGCAATTCGAAAGGGGATTTTGGTGAGCTGTTCTGCTGGGAATTATGGTCCAACCAGTGCTTCGGTTGGCAATGCCGCACCATGGATTCTTACTGTGGGAACAGTGAACGTGGCTGACGTTGAAGGAAAGGTAGTTCTTTGTGACTCAGATGGGAAAACAAGCATAACAGACAAAGGGCGAGTCGTGAAACAAGCTGGTGGTGTTGCCATGATTGTAGCCAATAGCGATCTTGCTGGCTCAACTACGATTGCATTGGAGCACGTTCTTCCGGCATCCCACGTGAGCTATTCTGCAGGTTTGAGTATCAAAGCCTATATAAGTTCAACATCACACCCTACAGCTTCAATCGCATTTGAGGGGACTATCATTGGAGAGCCATCAGCTCCGGAGGTTATTTTCTTCTCTGCAAGAGGACCAAGCTTGGCAACCCCCGGGATTTTGAAACCGGACATTATTGGTCCTGGAATGAACATTCTAGCAGCATGGCCTACTCCTTTACACAACAACAGCCCCTCAAAATTGACATTCAACCTGTTATCCGGTACATCGATGTCCTGCCCCCATCTCAGCGGTGTCGCAGCTTTGATCAAAAGCTCTCATCCTGACTGGTCACCCGCTGCAATCAAGTCTGCAATCATGACTACTGCAGATATACTGAACCTTAAAGATTCGCCCATTTTAGATCAAACCGAACATCCTGCTAAAGGCAGACGTTTGCTTTATTCATATCGGCATGTGATTAGTGGGTTTGCAGCGAGATTGACGGAGGAGGAGGTTAAAGCAATGGAAAAGAAGGATGGGTTTGTTTCGGCCACGCCAGAAAAAATTTACCATTTGCATACAACTCGCACCCCTGGTTTCTTGGGATTGCACAATAGGTCGGGGTTCTGGAAAGGATCCAACTTCGGTGAAGGGGTCATTATTGGAATATTGGACACAGGAGTATATCCACAACACCCTTCATTTAGTGACGAAGGAATGCCGCTCCCACCTGCTAAATGGACGGGAACCTGTGAATTCAACGGGACGGCCTGCAACAACAAGCTCATCGGTGCCAGGAATTTTGACAGTCTGACCCCGAAACAGCTACCTATTGATGAAGAGGGCCATGGCACCCACACGGCAAGCACTGCCGCGGGAAATTATGTGAAGCACGCCAATATGTATGGGAATGCCAAAGGCACTGCTGCTGGTATTGCACCTCGTGCTCATGTGGCAGTATATAAAGTATGTGGTTTATTGGGCTGCGGCGGAAGTGATATTTTAGCCGCATATGACGCTGCCATTGAAGACGGTGTTGATGTGCTTTCTCTCTCCCTCGGTGGAGAGTCTTCTCCTTTCTACGATGACCCGGTTGCTCTGGCTGCAAGCACCCTGGATAGAAGCATAACCGCGACAGCAAAGCTTGGAAACACGGAGGAATTTGATGGGGAATCGCTTTACCAGCCAAGAAATTTTTCTTCCAAACTATTGCCTCTTGTATATGCCGGGGCGAATGGTAACCAAACATCTGCTTATTGTGCGCCGGGATCCTTGAAAAACCTTGATGTCAAAGGAAAGGTAGTTGTTTGTGATAGAGGTGGAGATATAGGCAGAACTGAAAAAGGGGTGGAAGTGAAGAATGCTGGTGGTGCTGCCATGATCCTGGCCAATAGCATTAATGATAGCTTCAGTACATTTGCCGACCCTCACGTTCTTCCTGCAACACATGTGAGTTACGCAGCGGGTTTGAAGATCAAAGCTTACACGAAATCAACATCAAACCCTTCAGCTACAATCCTATTCAAGGGTACAAATGTCGGAGTCACATCTGCTCCTCAAATCACGTCCTTTTCCTCAAGAGGACCCAGCATTGCATCCCCGGGCATTTTGAAACCCGACATTACCGGACCTGGTGTGAGCATTCTAGCAGCATGGCCGGCCCCTCTCTTGAACCCCATTTTAGATGATAAACATATGCCTGCCGACCTATTTGCAATCGGTGCTGGTCATGTCAATCCATCAAAAGCAAATGATCCCGGACTCATTTACGACATCGAACCTTATGATTACATACCCTACTTGTGCGGTTTGGGTTACACTAATGCTCAGGTAGAAGCTATTGTATTGCGCAAGGTGAACTGCTCTAAGGAATCAAGTATACCTGAGGCAGAGCTAAATTATCCTTCATTTTCAATTGCTTTGGGCTCCAAGGATTTGAAATTTAAGAGGGTTGTCACGAATGTAGGCAAGCCTCACTCGTCTTACGCTGTGAGTATCAATGCACCAGAAGGAGTCGATGTGGTGGTTAAGCCTACTAAGATCCATTTCAACAAAGTGTACCAGAAGAAATCGTACACAGTCATCTTTAGGAGTATAGGCGGGGTTGATTCTAGGAACCGATATGCGCAAGGATTTCTCAAATGGGTCTCTGCCACACACTCTGCCAAAAGTCCAATATCTGTTACTCAGGACTTTGCATTTCTGAGCCTCCCGCCTCCCCCCCATCCATATATAAATTGA 2901 47.74 MPPPPAKWTGLCEFNKSGGCSNKVIGARNFESGSKGMPPFDEGGHGSHTASIAAGNFVKHANVLGNAKGTAAGVAPGAHLAIYKICTDEGCAGADILAAFDAAIADGVDVLSVSVGQKSTPFYDDAIAVGAFAAIRKGILVSCSAGNYGPTSASVGNAAPWILTVGTVNVADVEGKVVLCDSDGKTSITDKGRVVKQAGGVAMIVANSDLAGSTTIALEHVLPASHVSYSAGLSIKAYISSTSHPTASIAFEGTIIGEPSAPEVIFFSARGPSLATPGILKPDIIGPGMNILAAWPTPLHNNSPSKLTFNLLSGTSMSCPHLSGVAALIKSSHPDWSPAAIKSAIMTTADILNLKDSPILDQTEHPAKGRRLLYSYRHVISGFAARLTEEEVKAMEKKDGFVSATPEKIYHLHTTRTPGFLGLHNRSGFWKGSNFGEGVIIGILDTGVYPQHPSFSDEGMPLPPAKWTGTCEFNGTACNNKLIGARNFDSLTPKQLPIDEEGHGTHTASTAAGNYVKHANMYGNAKGTAAGIAPRAHVAVYKVCGLLGCGGSDILAAYDAAIEDGVDVLSLSLGGESSPFYDDPVALAASTLDRSITATAKLGNTEEFDGESLYQPRNFSSKLLPLVYAGANGNQTSAYCAPGSLKNLDVKGKVVVCDRGGDIGRTEKGVEVKNAGGAAMILANSINDSFSTFADPHVLPATHVSYAAGLKIKAYTKSTSNPSATILFKGTNVGVTSAPQITSFSSRGPSIASPGILKPDITGPGVSILAAWPAPLLNPILDDKHMPADLFAIGAGHVNPSKANDPGLIYDIEPYDYIPYLCGLGYTNAQVEAIVLRKVNCSKESSIPEAELNYPSFSIALGSKDLKFKRVVTNVGKPHSSYAVSINAPEGVDVVVKPTKIHFNKVYQKKSYTVIFRSIGGVDSRNRYAQGFLKWVSATHSAKSPISVTQDFAFLSLPPPPHPYIN* 967
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4339351 4356199 - Vvi2g437 Vvi2g437 783136

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g437 966 CDD Peptidases_S8_3 1 350 IPR034197 -
Vvi2g437 966 PANTHER SUBTILISIN-LIKE PROTEASE SBT1.7 778 948 - -
Vvi2g437 966 PANTHER SUBTILISIN-LIKE PROTEASE SBT1.7 167 367 - -
Vvi2g437 966 PANTHER SUBTILISIN-LIKE PROTEASE SBT1.7 368 589 - -
Vvi2g437 966 PANTHER SUBTILISIN-LIKE PROTEASE SBT1.7 1 169 - -
Vvi2g437 966 PANTHER SUBTILISIN-LIKE PROTEASE SBT1.7 588 774 - -
Vvi2g437 966 Pfam Peptidase inhibitor I9 367 413 IPR010259 -
Vvi2g437 966 Gene3D - 821 951 - -
Vvi2g437 966 PRINTS Subtilisin serine protease family (S8) signature 436 455 IPR015500 -
Vvi2g437 966 PRINTS Subtilisin serine protease family (S8) signature 499 512 IPR015500 -
Vvi2g437 966 Pfam PA domain 139 234 IPR003137 -
Vvi2g437 966 Pfam PA domain 625 712 IPR003137 -
Vvi2g437 966 Gene3D - 165 253 - -
Vvi2g437 966 Gene3D Peptidase S8/S53 domain 425 785 IPR036852 GO:0004252|GO:0006508
Vvi2g437 966 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 368 589 IPR045051 -
Vvi2g437 966 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 167 367 IPR045051 -
Vvi2g437 966 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 778 948 IPR045051 -
Vvi2g437 966 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 588 774 IPR045051 -
Vvi2g437 966 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 1 169 IPR045051 -
Vvi2g437 966 Pfam Fibronectin type-III domain 851 948 IPR041469 -
Vvi2g437 966 Gene3D - 602 732 - -
Vvi2g437 966 SUPERFAMILY Subtilisin-like 11 354 IPR036852 GO:0004252|GO:0006508
Vvi2g437 966 SUPERFAMILY PA domain 640 719 IPR046450 -
Vvi2g437 966 ProSiteProfiles Serine proteases, subtilase domain profile. 409 804 - -
Vvi2g437 966 Pfam Subtilase family 436 771 IPR000209 GO:0006508|GO:0008236
Vvi2g437 966 Pfam Subtilase family 40 350 IPR000209 GO:0006508|GO:0008236
Vvi2g437 966 ProSitePatterns Serine proteases, subtilase family, aspartic acid active site. 441 452 IPR023827 -
Vvi2g437 966 CDD PA_subtilisin_like 599 726 - -
Vvi2g437 966 CDD PA_subtilisin_like 166 249 - -
Vvi2g437 966 Gene3D Peptidase S8/S53 domain 1 379 IPR036852 GO:0004252|GO:0006508
Vvi2g437 966 ProSiteProfiles Serine proteases, subtilase domain profile. 1 380 - -
Vvi2g437 966 SUPERFAMILY Subtilisin-like 412 808 IPR036852 GO:0004252|GO:0006508
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g437 - - - vvi:100258212 1042.72
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi2g437 Vvi16g554 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g437 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00348 Chy09g01158 . . . . . . . . . . . . . . . . . . Bhi12g00346 . . . . . Lcy12g1729 . . . . . . . Lsi09g00345 . . Cme09g01692
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002315 3 2 1 2 2 2 1 1 3 3 2 2 1 2 2 1 2 3 1 1 2 8 1 0 2 5 1 1 2 3 62