Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g438 ATGGACGCTTCTTCGACCAACCACACTTCCTCCTCCCAGAACGATGTCGTTTTGCCGGAGCTCCTGACAGAGTTTATGGTGGATATGAAGTGTGAAGGCTGTGTTAATGCCGTAAAGAATAAGTTGCAAACCATCAGTGGAGTTAAGAATGTTGAGGTTGACTTGAGCAATCAAGTAGTCAGGGTTCTCGGTTCTTCACCTGTGAAGACCATGGCTGATGCTTTGGAACAGACTGGACGAAATGCCCGATTAATTGGCCAAGGGATCCCTGAAGATTTTTTGGTTTCTGCTGCTGTTGCTGAATTCAAAGGTCCAGATATTTTCGGTGTGGTTCGCTTGGCTCAAGTGAATATGGAATTGGCTAGGATTGAAGCCAGCTTTAGTGGGTTGTCTTCAGGGAAACATGGGTGGTCTATAAATGAATTTGGTGATCTCACAAGAGGTGCAGCAAGCACTGGTAAAGTGTTCAATCCAACAAACAAAGGAACGGATGAGGAGCCTCTTGGTGACCTGGGAACACTGGATGTGGATGAGAATGGTGAAGCCTTCTTCTTGGGTGTCAAGCAGAACCTGCGGGTTGGTGTTCTAATTGGACGGGCTGTAGTGGTATATGGAACTGAAGATAAATCAAATCCAGGTGTTGCAGCTGCAGTGATTGCTAGAAGTGCTGGGGTTGGTGAGAACTACAAAAAGATTTGCCTGTGTGATGGAACCACCATATGGGAATCAACTAACTCAGATTTTGTCGCCAGCAAGGTTTGA 762 46.06 MDASSTNHTSSSQNDVVLPELLTEFMVDMKCEGCVNAVKNKLQTISGVKNVEVDLSNQVVRVLGSSPVKTMADALEQTGRNARLIGQGIPEDFLVSAAVAEFKGPDIFGVVRLAQVNMELARIEASFSGLSSGKHGWSINEFGDLTRGAASTGKVFNPTNKGTDEEPLGDLGTLDVDENGEAFFLGVKQNLRVGVLIGRAVVVYGTEDKSNPGVAAAVIARSAGVGENYKKICLCDGTTIWESTNSDFVASKV* 254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4357334 4364368 + Vvi2g438 Vvi2g438 783137

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g438 253 Pfam Heavy-metal-associated domain 25 80 IPR006121 GO:0046872
Vvi2g438 253 SUPERFAMILY Cu,Zn superoxide dismutase-like 85 245 IPR036423 GO:0006801|GO:0046872
Vvi2g438 253 PANTHER SUPEROXIDE DISMUTASE CU-ZN -RELATED 16 253 IPR024134 -
Vvi2g438 253 CDD HMA 24 83 IPR006121 GO:0046872
Vvi2g438 253 Gene3D - 10 90 - -
Vvi2g438 253 ProSiteProfiles Heavy-metal-associated domain profile. 29 84 IPR006121 GO:0046872
Vvi2g438 253 SUPERFAMILY HMA, heavy metal-associated domain 22 85 IPR036163 GO:0046872
Vvi2g438 253 Pfam Copper/zinc superoxide dismutase (SODC) 109 210 IPR001424 GO:0006801|GO:0046872
Vvi2g438 253 Gene3D Superoxide dismutase, copper/zinc binding domain 91 221 IPR036423 GO:0006801|GO:0046872
Vvi2g438 253 PANTHER COPPER CHAPERONE FOR SUPEROXIDE DISMUTASE, CHLOROPLASTIC/CYTOSOLIC 16 253 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g438 K04569 CCS; copper chaperone for superoxide dismutase - vvi:100263358 498.434
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g438 . Blo03g00183 Bda06g00061 . . Bpe07g00137 . . . . . . . . . . . Bhi11g00229 . . . . . . Cla10g00318 Cam10g0333 Cec10g0347 Cco10g0339 Clacu10g0330 Cmu10g1170 Cre10g0580 . . Cone6ag0730 Cone9ag0734 Lsi07g01367 . . Cme06g02652 . . . . . . . Bma12g00113 . . . Cma06g00735 . Car06g00654 . Cpe08g00784 . . . . . . . . . . . . . . . . Csa03g00341 Chy06g01984 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009814 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 33