Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g439 ATGTCGTCGGACTCGTCTTCTCTCACTTACTCCATCACGTTGCCCAATCAACTCGCCGATCCCGTTACTGTTGATGCAGCCCCTGGAATTTCTGCTTCCGAGTTCAGGAAAGCTATTGATTCCTCGTTGTTCAAGCAATGGCTGAAGAATATGCAGAGTGAAGCTGGGGTATTGTCTAATGGAGCTATGTCTTTGGAACGTGTGCTTATTCAGGGAGTGGATATGTTTGGAAACCGCATTGGATTTCTCAAGTTCAAAGCAGATATTCTTGATAAGGAGACGGGGAAAAAGGTTCCTGGCATTGTGTTTGCAAGAGGACCAGCTGTAGCTGTGCTGATCCTTTTGGACTCAGAGGGCGAAATTTACACTGTTCTTACAGAACAGGTTAGGGTCCCTGTTGGGAAGCGTATCTTGGAATTGCCAGCTGGAATGTTGGAAAATGACAGAGGTGATTTTATTGGCACAGCAGCTCGTGAGGTAGAAGAGGAGACTGGTATACACTTAAATCTACAAGACATGGTTGACCTCACGGCCTTCTTGGACCCATCAACTGGATGCAGACTTTTTCCTTCACCGGGTGGGTGCGATGAGGAAATTAGCCTGTTTCTATACAAAGGAAGTGTAAGCAAAGAGACTATCACACAGCTGCAAGGAAAAAAAACAGGTCTTCGAGAACGTGGTGAGCTGATTAAGGTGCATGTAGTTCCCTATGAGAAATTGTGGCGTGTCACAGCTGATGCCAAGACTCTGTCAGCAATTGCCCTGTATGAGATGGCCAAGAAAGAAGGGTTATTGCCTCCAGCAGGCTAA 810 46.42 MSSDSSSLTYSITLPNQLADPVTVDAAPGISASEFRKAIDSSLFKQWLKNMQSEAGVLSNGAMSLERVLIQGVDMFGNRIGFLKFKADILDKETGKKVPGIVFARGPAVAVLILLDSEGEIYTVLTEQVRVPVGKRILELPAGMLENDRGDFIGTAAREVEEETGIHLNLQDMVDLTAFLDPSTGCRLFPSPGGCDEEISLFLYKGSVSKETITQLQGKKTGLRERGELIKVHVVPYEKLWRVTADAKTLSAIALYEMAKKEGLLPPAG* 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4365044 4369553 - Vvi2g439 Vvi2g439 783138

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g439 269 ProSiteProfiles Nudix hydrolase domain profile. 104 257 IPR000086 -
Vvi2g439 269 CDD ADPRase_NUDT5 105 258 - -
Vvi2g439 269 Pfam NUDIX domain 105 242 IPR000086 -
Vvi2g439 269 PANTHER NUDIX HYDROLASE 14, CHLOROPLASTIC 2 266 - -
Vvi2g439 269 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 75 262 - -
Vvi2g439 269 SUPERFAMILY Nudix 83 257 IPR015797 -
Vvi2g439 269 PANTHER UDP/ADP-SUGAR PYROPHOSPHATASE 2 266 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g439 K18447 NUDX14; ADP-sugar diphosphatase [EC:3.6.1.21] - vvi:100241091 522.702
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g439 . . . . . . . . . . . Cma15g01181 . . . . . . . . . . . . . . . . . . . Cone8ag0345 Cone12ag0339 . . . . . . . Blo19g00291 . . Bpe08g01456 . . . . . Cmo15g01243 . . . . . Cpe13g00192 . . . . . . . Cla01g00327 Cam01g0339 Cec01g0333 Cco01g0346 Clacu01g0343 Cmu01g0323 Cre09g2187 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006179 1 1 1 0 1 2 1 2 2 1 1 2 1 1 1 1 2 2 1 2 1 3 1 1 1 1 1 1 1 1 38