Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g44 ATGGCAGATCTCTGTAGATCTTCGACGTTCTTCTCCGATCAGAACCTCTGCAACGCAGACATCATCGGCTCCTCAGAGGCCAGAGCCAGAATCGAAGTGGCAGTTCTCAATTTTCTCAAGATCTTGAATTCTCCTTCTCCTGCTATCTCCGATCTCCCTCTGATCAGTAGAAGGTGGAGTAACAGTAGGGTGAATCGAGGATTGCTGACTGAGGTTTCTTGCATTTTCCTCTCGCATTCCTTTTGTACAAGGTCTTTGATGAGGCCAAATGCTGCTAAAGCCTTTGTTAGAGTGTGGAAGGTTGTGGAGATGTGTTTCCAGATTCTGGTACAGGAAAAGAGGGTGACTCAGAGGGAGCTCTTCTACAAATTGCTTTGTAGTTCTCCACAGTATTTCACTTGTCAGTTACAGGTTAACAGGACAATCCAAGATGTTGTGGCCTTGCTTCGGTGCAGTCGATATAGTCTGGGGATCATGGCATCTAGCAGAGGAGCTGTAACAGGCCGGCTTTTGTTGCAGGCATTCATCTCTGAAACTGTGGACTGTTCTGCATGTGGGTCATCTGGGCACGCCATCTCTGGTGACATGAATTTATTAGAGAGGATGGTTATGAAGACAGATGCACGGTATATCATTGTGGTGGAAAAGCATGCGATATTCCAGCGGCTGGCTGAGGATCGAGTGTTCAATCAAATTCCAAGCATTCTTATCACGGCCAAAGGCTACCCAGATATTGCCACAAGGTTCCTGCTGTACCGAATGAGCAGAGCTTTCCCTGATTTGCCCATTTTGGCACTGGTTGACTGGAATCCAGCTGGACTGGCTATACTCTGCACCTTCAAATTTGGAAGCATTGGGATGGGCCTCGAGGCATACAGATACGCTTGTAATGTCAAGTGGCTAGGGCTTCGAGGGGATGATTTACAGCTTATACCTGAAGAATCCTTGATTCCATTGAAGCCACGAGACCTTCAAATTGCTAAGAGCTTGAAGTCCTCAGAGATCTTAGAGGAGAACTACAGAAATGAATTAGAAGTGATGGTTCAGAGTGGCAGACGAGCAGAAATTGAAGCCCTCTACTTCCGTGGATACAATTTCTTGGGTAAATACATAGCAAAGAAAATAGTACAAGCCAATTACGTCTAA 1146 45.99 MADLCRSSTFFSDQNLCNADIIGSSEARARIEVAVLNFLKILNSPSPAISDLPLISRRWSNSRVNRGLLTEVSCIFLSHSFCTRSLMRPNAAKAFVRVWKVVEMCFQILVQEKRVTQRELFYKLLCSSPQYFTCQLQVNRTIQDVVALLRCSRYSLGIMASSRGAVTGRLLLQAFISETVDCSACGSSGHAISGDMNLLERMVMKTDARYIIVVEKHAIFQRLAEDRVFNQIPSILITAKGYPDIATRFLLYRMSRAFPDLPILALVDWNPAGLAILCTFKFGSIGMGLEAYRYACNVKWLGLRGDDLQLIPEESLIPLKPRDLQIAKSLKSSEILEENYRNELEVMVQSGRRAEIEALYFRGYNFLGKYIAKKIVQANYV* 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 505012 508954 - Vvi2g44 Vvi2g44 782743

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g44 381 PANTHER MEIOTIC RECOMBINATION PROTEIN SPO11 13 380 IPR002815 GO:0003677|GO:0003918|GO:0005694
Vvi2g44 381 PRINTS DNA topoisomerase VI subunit A family signature 135 152 IPR002815 GO:0003677|GO:0003918|GO:0005694
Vvi2g44 381 PRINTS DNA topoisomerase VI subunit A family signature 153 168 IPR002815 GO:0003677|GO:0003918|GO:0005694
Vvi2g44 381 PRINTS DNA topoisomerase VI subunit A family signature 211 228 IPR002815 GO:0003677|GO:0003918|GO:0005694
Vvi2g44 381 PRINTS DNA topoisomerase VI subunit A family signature 235 256 IPR002815 GO:0003677|GO:0003918|GO:0005694
Vvi2g44 381 PRINTS DNA topoisomerase VI subunit A family signature 268 284 IPR002815 GO:0003677|GO:0003918|GO:0005694
Vvi2g44 381 Gene3D - 14 161 IPR036388 -
Vvi2g44 381 PANTHER MEIOTIC RECOMBINATION PROTEIN SPO11 13 380 - -
Vvi2g44 381 PRINTS SPO11 homologue signature 82 98 IPR013048 GO:0003677|GO:0003918|GO:0042138
Vvi2g44 381 PRINTS SPO11 homologue signature 127 147 IPR013048 GO:0003677|GO:0003918|GO:0042138
Vvi2g44 381 PRINTS SPO11 homologue signature 225 240 IPR013048 GO:0003677|GO:0003918|GO:0042138
Vvi2g44 381 PRINTS SPO11 homologue signature 273 292 IPR013048 GO:0003677|GO:0003918|GO:0042138
Vvi2g44 381 Gene3D - 162 381 - -
Vvi2g44 381 CDD TOPRIM_TopoIIB_SPO 209 366 IPR034136 -
Vvi2g44 381 SUPERFAMILY DNA topoisomerase IV, alpha subunit 92 380 IPR036078 GO:0003677|GO:0005694
Vvi2g44 381 Pfam Type IIB DNA topoisomerase 93 158 IPR013049 GO:0003677|GO:0003824|GO:0005524|GO:0005694|GO:0006259
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g44 K10878 SPO11; meiotic recombination protein SPO11 - vvi:104881111 741.88
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g44 . . . . . . . Bma14g00597 . . Cma02g01424 . Car02g01193 . . . Cpe05g00362 . . . . . . . . . . . . . . Cone8ag0276 . . . . Csa05g00240 . . . . . . . Bpe11g00672 . . . Cmo02g01458 . . . . . . . Bhi12g00322 . . . . . Lcy12g1610 . . . . . . . . . . Cme09g01800
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006132 0 6 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 6 1 1 39