Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g442 ATGGAGTTGTTGAGTTGTCTGCTGTGTTTTCTTGCTGCTTGGACTTCAATTTACATCATGTTTTCAGCCAGAAGAGGAAGAAAGCATGCTGCTCACAAACTTCCTCCAGGACCAGTTCCGCTTCCCATAATAGGAAGCCTCTTAAACCTGGGTAACAGACCCCATGAGTCCCTCGCCAATCTTGCAAAAACTTACGGCCCAATTATGACTCTCAAACTTGGCTATGTAACCACAATAGTCATCTCTTCTGCCCCCATGGCCAAAGAAGTCCTCCAAAAGCAGGATCTCTCCTTCTGCAACCGATCCATCCCTGATGCCATCCGAGCCGCAAAACACAACCAACTGTCGATGGCCTGGCTACCTAAAGTGCAAGAGCTTCTTGCGAATGTTGAACAGAGCTGCCAAGCTGGTGGTCCTGTAGATATAGGCCAAGAAGCTTTTAGAACTAGTCTCAACTTACGGATTGATCCACAAAGTATAAGGCGTCGTTTGACAATTTATTTTGGAAGGATGATTGAGATCTTTGATAGAATGATCAAGCAACGGTTACAGCTAAGAAAAAATCAAGGTTCAATAGCTAGCAGTGATGTGTTAGACGTTCTTCTCAACATCAGTGAAGATAACAGCAGTGAGATTGAAAGAAGTCATATGGAACATTTGTTATTGGACTTATTTGCTGCGGGGACTGACACAACTTCGAGCACATTGGAATGGGCAATGGCAGAGCTGCTACACAACCCTGAAACACTTTTGAAAGCCCGAATGGAACTCCTGCAAACCATCGGCCAAGACAAACAGGTGCTGGTGAACGCATGGGCTATAGGTCGAGACCCGAACACATGGGAGAACCCCAACTCATTTGTGCCAGAGAGGTTCTTGGGGTTGGACATGGACGTGAAGGGCCAGAATTTTGAGCTGATTCCGTTTGGTGCTGGCAGGAGAATCTGTCCTGGGCTGCCATTGGCAATCCGGATGGTTCACTTGATGCTGGCCTCGCTCATTCACTCCTATGATTGGAAACTTGAAGATGGGGTGACACCGGAAAACATGAACATGGAAGAAAGATATGGCATTAGTTTACAAAAGGCTCAGCCCCTGCAAGCTCTACCTGTACGGGTTTGA 1122 46.61 MELLSCLLCFLAAWTSIYIMFSARRGRKHAAHKLPPGPVPLPIIGSLLNLGNRPHESLANLAKTYGPIMTLKLGYVTTIVISSAPMAKEVLQKQDLSFCNRSIPDAIRAAKHNQLSMAWLPKVQELLANVEQSCQAGGPVDIGQEAFRTSLNLRIDPQSIRRRLTIYFGRMIEIFDRMIKQRLQLRKNQGSIASSDVLDVLLNISEDNSSEIERSHMEHLLLDLFAAGTDTTSSTLEWAMAELLHNPETLLKARMELLQTIGQDKQVLVNAWAIGRDPNTWENPNSFVPERFLGLDMDVKGQNFELIPFGAGRRICPGLPLAIRMVHLMLASLIHSYDWKLEDGVTPENMNMEERYGISLQKAQPLQALPVRV* 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4399411 4401227 + Vvi2g442 Vvi2g442 783141

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g442 373 Gene3D Cytochrome P450 25 263 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi2g442 373 Pfam Cytochrome P450 35 102 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi2g442 373 Pfam Cytochrome P450 260 361 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi2g442 373 Pfam Cytochrome P450 152 266 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi2g442 373 PANTHER CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 5-RELATED 122 153 - -
Vvi2g442 373 PANTHER CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 5-RELATED 154 267 - -
Vvi2g442 373 PANTHER CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 5-RELATED 261 372 - -
Vvi2g442 373 PANTHER CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 5-RELATED 2 121 - -
Vvi2g442 373 SUPERFAMILY Cytochrome P450 32 370 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi2g442 373 PANTHER CYTOCHROME P450 FAMILY MONOOXYGENASE 261 372 - -
Vvi2g442 373 PANTHER CYTOCHROME P450 FAMILY MONOOXYGENASE 154 267 - -
Vvi2g442 373 PANTHER CYTOCHROME P450 FAMILY MONOOXYGENASE 2 121 - -
Vvi2g442 373 PANTHER CYTOCHROME P450 FAMILY MONOOXYGENASE 122 153 - -
Vvi2g442 373 Gene3D Cytochrome P450 264 364 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi2g442 373 PRINTS E-class P450 group I signature 62 81 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi2g442 373 PRINTS E-class P450 group I signature 86 107 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi2g442 373 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 309 318 IPR017972 GO:0005506|GO:0016705
Vvi2g442 373 PRINTS P450 superfamily signature 227 244 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi2g442 373 PRINTS P450 superfamily signature 307 316 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi2g442 373 PRINTS P450 superfamily signature 316 327 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g442 - - K23810 vvi:100232891 667.537
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi2g442 Vvi15g522 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g442 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00349 Chy09g01155 . . . . . . . . . . . . . . . . . . Bhi12g00547 . . . . . . Cla01g00330 . . . . . . Lsi09g00352 . . Cme09g01689
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0031821 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 2