Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g446 ATGGACTCCCATAACCCACCTTCCAAGATTGCCCGCCTTTCAGGGTCACCTCCAATTGGGTTGGGTCTTGAACTTGGACGTGGATCTGGGGATATGCTTGGCTGCACAAAGTCCTGTGGGTTCACGTTTCTCCAGTTGCAGGAACTGGAGCACCAGGCTCTCATCTACAAATACATGGAAGCGGGGCTTCCAGTGCCTTATCATCTAGTTTATCCGATATGGAAGAGTGTAGCTTGCTCTCTCGTGGGTCTCACTGCTGGGGCGTATCAACACCACCCTGGCTTTCTGGGTTTGAGTCCTTTGTATTTGGACTATAAAAACAGCATGGATCCAGAGCCAGGGAGATGTAGAAGAACGGATGGGAAGAAATGGAGGTGTAGCAAAGAAGCAGTCCCGGATCAGAAGTACTGTGAGCGGCACATGCACAGAGGCCGTCAGCGTTCAAGAAAGCATGTGGAAGCTTCCCAACTTGGCGCTAGGACAGCTACTTCTGCTCTTAATAACACAGTCAGAGATGCTGTCACCTCAAACACAAATCTCTCAATTTCACTCCCAGTGAGCAGCACCACAAATGACATCTCCCCCAAGAGTGTTCTTCAACTGGAGAAAGTGAGGTGCTGTGCCAGTTTTGCCCCTTAG 639 50.23 MDSHNPPSKIARLSGSPPIGLGLELGRGSGDMLGCTKSCGFTFLQLQELEHQALIYKYMEAGLPVPYHLVYPIWKSVACSLVGLTAGAYQHHPGFLGLSPLYLDYKNSMDPEPGRCRRTDGKKWRCSKEAVPDQKYCERHMHRGRQRSRKHVEASQLGARTATSALNNTVRDAVTSNTNLSISLPVSSTTNDISPKSVLQLEKVRCCASFAP* 213
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4421517 4424601 + Vvi2g446 Vvi2g446 783145

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g446 212 Pfam QLQ 41 74 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vvi2g446 212 ProSiteProfiles WRC domain profile. 110 154 IPR014977 -
Vvi2g446 212 SMART QLQ_2 39 75 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vvi2g446 212 PANTHER - 19 179 IPR031137 GO:0005634|GO:0006351|GO:0032502
Vvi2g446 212 PANTHER GROWTH-REGULATING FACTOR 9 19 179 - -
Vvi2g446 212 Pfam WRC 111 153 IPR014977 -
Vvi2g446 212 ProSiteProfiles QLQ domain profile. 40 75 IPR014978 GO:0005524|GO:0005634|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g446 - - - vvi:100261588 417.542
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi2g446 Vvi15g537 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g446 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006039 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 6 2 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14593 PF08879 WRC 5.20E-22 No_clan Vvi TF