Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g448 ATGGCGGATAAAGGGGAGAAGCCACCAAAAAGGCCCAATAAGTTTCGGGACATGAAGAGATCCCAAAGGAATTTCAGCAGGCAGGTCTCGTTAGAGACTGGGTTTTCAGTGCTTAATAGAGAGTCTAAAGCCAAAGATGAGAGGCGTGTTCTCAGGAGAAGTGGAAGAAGCTTTGGAGGTTTTGGTGCTACTAACCGAGTTGGTGGGGATGGAAGAAAAGGAGACTTCAGTATCTTCATGACAAAGTCCGCTCTCACTAAGCAGAATTCCTCATTACCTTTGAGAAGGGAGAGTGAGTTGGATTTTCAGAAAAATGATGGTTCGGGAGTTGATGACTCTGTTCCTGCGGGGAGATACTTTGCTGCTCTTAGAGGGCCTGAACTAGACCAAGTCAAGGAATCTGAAGACATTCTCCTCCCAAAAGATGAGCAATGGCCCTTCCTACTTAGATTCCCAATTGGTTGCTTCGGTATCTGTCTAGGCCTTAGCAGCCAAGCCGTCCTATGGCGTGCCCTTGCAACAAGTCCAGCTACCAAATTCCTCCATGTTACCCCCTTCATCAACCTTGCTCTCTGGTTTCTAGCCCTAGCAGTTCTTCTCTCTGTCTCCTTCATCTACATCCTCAAGTGTGTGTTCTACTTTGAAGCTGTCAAAAGAGAATACTTTCATCCCGTCCGAGTCAACTTCTTCTTTGCCCCCTGGGTTGTCTGCATGTTCCTAGCCCTCAGCCTTCCATCCATTCTTGCTCCTAAAACCCTTCACCCTGCCATTTGGTGTATCTTCATGGCACCTTATTTCTTTCTTGAACTTAAAATCTATGGTCAATGGCTTTCTGGGGGAAAGAGACGTCTCTGTAAGGTAGCCAATCCATCTTCTCATCTCTCAGTAGTTGGAAACTTTGTGGGGGCCATTTTAGCATCCAAGGTGGGATGGCAGGAAGCTGCTAAGTTCTTGTGGGCAGTTGGCTTTGCGCATTATCTCGTGGTGTTTGTCACATTGTATCAGAGGTTGCCTACCAGTGAAGCATTGCCTAAGGAGCTTCACCCTGTGTATTCCATGTTTATTGCAGCGCCGTCGGCTGCAAGCATTGCTTGGGAAACTATATATGGTGACTTTGATGGGTTGTCGAGGACTTGCTACTTCATTGCATTGTTTCTCTATATATCACTGGTTGTTCGGATCAACTTCTTCAGGGGCTTTAGGTTTTCAGTGGCATGGTGGTCTTACACCTTCCCCATGACAACAGTATCAGTGGCAACCATAAAGTATGCAGAGCAGGTCCCTTCAGTTCTAAGCAAGGGCCTTGCAGTATTTCTTTCATTCATGTCATCAACAATGGTCTCAGTGTTGTTCGTCTCTACACTTCTACATGCCTTTGTTTGGCACACCTTGTTCCCCAATGACCTCGCGATTGCCATTACAAAAAGAAAACATGGCAGGGATAAGAAACCGTTTAAAAAGGCCTACGATATAAGGCGTTGGACTAAGCAGTCTCCTTTGTCCTTTGTTTCAGCCATGACCAAAATTAATTCTGCAGACAAGGGTTTGGATGAGCAGAAGGAAGCAGAGCACTGA 1575 46.16 MADKGEKPPKRPNKFRDMKRSQRNFSRQVSLETGFSVLNRESKAKDERRVLRRSGRSFGGFGATNRVGGDGRKGDFSIFMTKSALTKQNSSLPLRRESELDFQKNDGSGVDDSVPAGRYFAALRGPELDQVKESEDILLPKDEQWPFLLRFPIGCFGICLGLSSQAVLWRALATSPATKFLHVTPFINLALWFLALAVLLSVSFIYILKCVFYFEAVKREYFHPVRVNFFFAPWVVCMFLALSLPSILAPKTLHPAIWCIFMAPYFFLELKIYGQWLSGGKRRLCKVANPSSHLSVVGNFVGAILASKVGWQEAAKFLWAVGFAHYLVVFVTLYQRLPTSEALPKELHPVYSMFIAAPSAASIAWETIYGDFDGLSRTCYFIALFLYISLVVRINFFRGFRFSVAWWSYTFPMTTVSVATIKYAEQVPSVLSKGLAVFLSFMSSTMVSVLFVSTLLHAFVWHTLFPNDLAIAITKRKHGRDKKPFKKAYDIRRWTKQSPLSFVSAMTKINSADKGLDEQKEAEH* 525
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4431619 4434153 + Vvi2g448 Vvi2g448 783147

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g448 524 PANTHER - 10 521 IPR030183 GO:0006873|GO:0008308|GO:0016021
Vvi2g448 524 CDD TDT_SLAC1_like 150 454 - -
Vvi2g448 524 PANTHER GUARD CELL S-TYPE ANION CHANNEL SLAC1 10 521 - -
Vvi2g448 524 Gene3D - 147 465 IPR038665 -
Vvi2g448 524 MobiDBLite consensus disorder prediction 1 28 - -
Vvi2g448 524 MobiDBLite consensus disorder prediction 1 23 - -
Vvi2g448 524 Pfam Voltage-dependent anion channel 151 455 IPR004695 GO:0016021|GO:0055085
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g448 - - - vvi:100244459 1030.78
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g448 Blo02g01074 . . . Bpe05g00612 . . . Cmo06g00762 Cmo16g01074 . . . . . Cpe14g00848 . . . . . . . . Cla10g00315 Cam10g0330 Cec10g0343 Cco10g0335 Clacu10g0326 Cmu10g1166 Cre10g0576 . . Cone6ag0727 Cone9ag0733 Lsi07g01364 . . Cme06g02649 . . . . . . Bma05g00792 . . . . Cma06g00740 Cma16g01028 . Car16g00979 Cpe08g00780 . . . . . . . . . . . . . . . . Csa03g00338 Chy06g01987 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008638 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 35