Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g45 ATGGGGGACTGGGATTTGCAGTCTGTGGTTAGGGGATGCGCCATTAATGAAGCTTCCTCGGCCGCTTTCATGGACACTTCGTTGCCTTGCTTCGGCCCCTTGGCGATTCAACAAGACGAACTTCTCTTCAGCTTCCCCGACTTCTTTGAAACTACCACTGTTTTGGACGAATTGGAGCAGTTGTACAAGCCTTTCTACCCTGTTCTGCAACCGCTTTCTCCCGTACGAACAGCTGCCGCGCCCTCCATTTCCATGGAAGACCCAAAGAAGATGAAAGGGCAGGACCATCTTCCTGGCACTGCTGACAATGGTGGCGGTGGCCCTGGTTCTCACGGGGCTAAACCCAAGAAAAGGAAGAACCAGCAAAAACGAGTGGTGCAACATGTAACAGCCGAGGGTCTGTCTTCGGATGTGTGGGCTTGGCGTAAATATGGGCAGAAACCCATTAAGGGTTCGCCTTATCCAAGGAGTTATTACAGGTGCAGTAGTTTAAAGGGGTGTTTGGCGAGAAAACAAGTGGAGAGGAGCCGAACAGATCCGGAGATTTTCATTGTGACCTACACAGCTGAACACAGCCATTCTCATCCAACTCGCCGGAATTCCCTCGCCGGAATCACCAGAAACAAGTTCTCCACACCTAAAAAACCCAGCAAAGCCGAGCCGCCCAGCACACCAACAACAGTGGCCAATGATTCGTCCTCTTCTCCAATTTCAACCTCCGATTTCTCTGCAACAACCCCTTTAATGTCCGCCATGGAAGATGAGTTGCAGCCATATGTAAGCCAACAAGAGATCCGAGGAGAAGAAGATCAGAAGCTAAACGAGAGGAATAACACCAACGAGGTTCACATCTCTGATGAGATACTGAACAACGATTTCTTCCTGGGCCTGGAGGACATGGACTTTTCTGTACAGTTCCCGTCTTCTTTTCTTCAACCTTGGTTCGCCGCAACTGCCGCCGGCGGTTGCTGA 972 50.72 MGDWDLQSVVRGCAINEASSAAFMDTSLPCFGPLAIQQDELLFSFPDFFETTTVLDELEQLYKPFYPVLQPLSPVRTAAAPSISMEDPKKMKGQDHLPGTADNGGGGPGSHGAKPKKRKNQQKRVVQHVTAEGLSSDVWAWRKYGQKPIKGSPYPRSYYRCSSLKGCLARKQVERSRTDPEIFIVTYTAEHSHSHPTRRNSLAGITRNKFSTPKKPSKAEPPSTPTTVANDSSSSPISTSDFSATTPLMSAMEDELQPYVSQQEIRGEEDQKLNERNNTNEVHISDEILNNDFFLGLEDMDFSVQFPSSFLQPWFAATAAGGC* 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 512162 513533 + Vvi2g45 Vvi2g45 782744

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g45 323 SMART WRKY_cls 135 195 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi2g45 323 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 3 301 IPR044810 GO:0003700
Vvi2g45 323 MobiDBLite consensus disorder prediction 221 243 - -
Vvi2g45 323 PANTHER WRKY TRANSCRIPTION FACTOR 63-RELATED 3 301 - -
Vvi2g45 323 MobiDBLite consensus disorder prediction 198 212 - -
Vvi2g45 323 Gene3D WRKY domain 118 189 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi2g45 323 MobiDBLite consensus disorder prediction 79 125 - -
Vvi2g45 323 ProSiteProfiles WRKY domain profile. 130 196 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi2g45 323 Pfam WRKY DNA -binding domain 137 193 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi2g45 323 SUPERFAMILY WRKY DNA-binding domain 130 196 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi2g45 323 MobiDBLite consensus disorder prediction 190 243 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g45 K13426 WRKY29; WRKY transcription factor 29 K13425 vvi:100251862 620.928
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi2g45 Vvi16g787 ECH
Vvi2g45 Vvi15g833 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g45 . . . . Bpe05g00659 . . . . Cmo16g00630 . . Car02g00702 . . Cpe14g00491 Cpe05g00637 . . . . . . . Cla07g00748 Cam07g0800 Cec07g0865 Cco07g0839 Clacu07g0780 Cmu07g0788 Cre07g1142 . . Cone6ag0812 Cone9ag0811 . . . Cme07g01614 . . Bda07g01906 . . . Bma05g00832 . . Cmo02g01102 Cmo15g01124 . Cma16g00580 . . . . . . . . . . . . . . . . . . . Csa04g00611 Chy07g01200 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007717 1 1 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14594 PF03106 WRKY 4.10E-25 CL0274 Vvi TF