Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g452 ATGGTATCGAGCATGTTTCCAATCTCTCTCAAGAAACAAATTGGGGAGACATTCTGCAACAAAGGATCATTGAAAGACATGGACGTTAGAGGAAAGGTAGTTGTTTGTGACACAGAAGATGGGGCAATATACGTCTCTGATAAAGAAGAAGAAGTGAAAAATGCCGGCGGTGTTGCCATCATTCTTCCAAATAACAAATATCGCGGCTTCAGTACGAGCGAAATTAATGCTGATATTCTTCCTGCAACACATTTGAGCTACTCATCAGGTTTGAAGATCAAGGCTTATATAAATTCAACAACAAAGCCTACAGCTACAATTGAATTTAAAGGAACCATCATTGGAATCTCGTCTGCTCCTGAAGTGGCTCACTTTTCTTCCAGAGGACCTAGCTTGACCAGTCCGGGTATTTTAAAACCAGATATTATCGGCCCCGGAGCAAATATTCTTGCTGCATGGCCTGCAAATCGCATGAACAGTAGCTCATTTAACATAGTTTCAGGCACATCTCTATCATGCCCCCATCTCAGCGGCGTCGCAGCTTTGCTAAAAAGCACTCATCCTGAATGGTCACCTGCTGCCATTAAGTCCGCAATCATGACTACTGCAGATGAGGTAAACCATGAAAACAAACCCATTATGGATCAAACACATCAGCCTGCTGACATTTTCGCTGTGGGTGCCGGACATGTGAACCCATCAAGAGCAAACGATCCTGGACTCATTTACGACATCCAACCAGAAGATTACATACACTATCTCTGTGGTTTGGGTTACAGTGACTCTCAGGTAGGAATTGTTGTGAATCGGAGGGTGAACTGCTCTGAAGAATCAACCATCCCAGAAGCACAACTGAATTATCCTTCGTCTTCTATTGCTCTGGGGTCTAGTACTACTACTCAGGAGTTCACCAGAACAGCCACAAATGTTGGTGCAGTTGATTCAACTTACATAATCGAAATTTTTGCACCACCAGGAGTCAATGTGAGTGTGAAACCAGACAAGCTTGACTTCACCAGGCTGAACCAGAAGAAGACATATGCAGTTATGTTCAGCAAAATAAGGGCCAAGGGGAAAAATAGAAAGCCACATGCACAAGGGTTTTTAAGATGGGTTTCTGCTAAACATTCTGTCAGAAGCCCCATATCTGTTAAGTTTGAATGA 1164 43.13 MVSSMFPISLKKQIGETFCNKGSLKDMDVRGKVVVCDTEDGAIYVSDKEEEVKNAGGVAIILPNNKYRGFSTSEINADILPATHLSYSSGLKIKAYINSTTKPTATIEFKGTIIGISSAPEVAHFSSRGPSLTSPGILKPDIIGPGANILAAWPANRMNSSSFNIVSGTSLSCPHLSGVAALLKSTHPEWSPAAIKSAIMTTADEVNHENKPIMDQTHQPADIFAVGAGHVNPSRANDPGLIYDIQPEDYIHYLCGLGYSDSQVGIVVNRRVNCSEESTIPEAQLNYPSSSIALGSSTTTQEFTRTATNVGAVDSTYIIEIFAPPGVNVSVKPDKLDFTRLNQKKTYAVMFSKIRAKGKNRKPHAQGFLRWVSAKHSVRSPISVKFE* 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4454772 4457750 - Vvi2g452 Vvi2g452 783151

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g452 387 ProSiteProfiles Serine proteases, subtilase domain profile. 1 237 - -
Vvi2g452 387 CDD PA_subtilisin_like 18 107 - -
Vvi2g452 387 Gene3D - 14 114 - -
Vvi2g452 387 Pfam Fibronectin type-III domain 284 384 IPR041469 -
Vvi2g452 387 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 16 384 IPR045051 -
Vvi2g452 387 Gene3D Peptidase S8/S53 domain 115 250 IPR036852 GO:0004252|GO:0006508
Vvi2g452 387 PANTHER SERINE PROTEINASE 1, PUTATIVE-RELATED 16 384 - -
Vvi2g452 387 SUPERFAMILY Subtilisin-like 116 241 IPR036852 GO:0004252|GO:0006508
Vvi2g452 387 Gene3D - 254 386 - -
Vvi2g452 387 Pfam Subtilase family 113 206 IPR000209 GO:0006508|GO:0008236
Vvi2g452 387 Pfam PA domain 20 92 IPR003137 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g452 - - - vvi:100253079 496.893
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g452 . . . . . . . Bma14g00573 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo19g00290 . . Bpe08g01455 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0018742 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 2 5