Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g456 ATGGCTTCACTATTCGGAGCGGGGCTTGCCCTAACCCTAGTGGGACCCGCCTCTGCTGCAGAGTTACCATTGCTGACTACGCCTCTTCAATTCAGTGAGCCCGCAAATGCTCTATCATTGCCCACGTGGGCCATTCACGTCTCCAGCGTCGTAGAATGGATTATAGCTATGATTTTGGTGTGGAAATATGGGGAGCAACCTGGATTTGAATCTTGGAAGGGTCTCTCTTGGGGTATGGTACCCCTGCTTGGTGGAGCATTCTGTGCATGCACATGGCATTTCTTTTATAACTCTGAGTCTCTTGAGGTATTGGTGGCTCTTCAAGCAGCATTAACGGTTCTGGGTAATGCCACAATGTGTATTGCTGCATTCCGCATATACCAGTCATCACAGGAACGTTCCAAGAATCTGTAA 414 48.79 MASLFGAGLALTLVGPASAAELPLLTTPLQFSEPANALSLPTWAIHVSSVVEWIIAMILVWKYGEQPGFESWKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVALQAALTVLGNATMCIAAFRIYQSSQERSKNL* 138
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4494717 4500715 + Vvi2g456 Vvi2g456 783155

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g456 137 Pfam Protein of unknown function (DUF2499) 37 124 IPR019634 -
Vvi2g456 137 PANTHER NUCLEOLAR-LIKE PROTEIN-RELATED 2 136 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g456 - - - vvi:100254735 267.7
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g456 . . . . Bpe05g00609 . . . Cmo06g00767 Cmo16g01077 . . . . . Cpe14g00851 . . . . . . . . Cla10g00311 Cam10g0324 Cec10g0337 Cco10g0331 Clacu10g0322 Cmu10g1161 Cre10g0571 Cone8ag0350 Cone12ag0345 . . . . . Cme06g02644 . . . . . . Bma05g00789 . . . . Cma06g00745 Cma16g01031 Car06g00665 Car16g00982 Cpe08g00776 . . . . . . . . . . . . . . . . Csa03g00332 Chy06g01992 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010004 1 0 1 1 1 0 2 1 1 1 0 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 33