Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g461 ATGATGATTATTGTCGCCGTTATCCAAAAATTGACTGGAGGATCTGTTGCCATCTCTCTCTCTCTCTCTAAAACGCGGAATTTTCTGGCTCGCATCTCACACGATTCACTCCACTTTCTTTCAAAACTTTCTCGCTCTTTCTTTCAAATTTGCTCGGAAAATTTCACTCCAGGAGTTCAATGGCTGCGACCCTTTGAGGCTTGGGATGTGAAAATGGCGGCTTCGGGTGGTTACAGAAATGGAACTCACAAGGGCAATATGAAGGTGGATAGGCTGGTCTCCCTCAGTTCCGCCACCAAGTCTTCCTCTCTCAAGTCCAAGCCTTCCCCAGCGTCGCCCGCTTCTTCTGGGCTCCGCCGCAACAGCACCGGCTCTGTCGGTGGAGCAAAAGACGATGCTGGAGTTCCTGGGAGGGTTCGAGTGGCTGTAAGATTGCGACCGCGGAATGCAGAGGAGTTGGTGGCTGATGCTGATTTTGCTGATTGTGTAGAATTGCAGCCAGAGCTTAAAAGGTTAAAACTTCGAAAGAACAATTGGGACTCAGACACCTATGAGTTCGATGAAGTGCTTACAGAGTTTGCATCACAAAAACGTGTATATGAAGTTGTTGCGAAACCTGTTGTGGAGAGTGTTTTGGATGGTTACAATGGAACAGTCATGGCATATGGACAGACTGGTACTGGGAAAACATACACACTTGGGCGACTTGGAGAGGAAGATACTGCTGCGCGTGGAATAATGGTGCGTGCAATGGAGGATATTTTAGCAGAAATTTCTCCAGAGACTGATTCTGTCTCAGTCTCCTATTTGCAGCTTTATATGGAAACCATTCAGGACCTCCTTGATCCTACTAATGACAACATATCTATCATGGAAGACCCGAAAACTGGAGATGTTTCACTACCAGGGGCCACCCTAGTAGAAATCAGGGACCAGCGGAGTTTTGTGGAACTGCTACGGTTAGGGGAAGCTCACCGCTTTGCTGCAAACACAAAATTGAATACCGAATCATCTCGTAGTCATGCTATTTTGATGGTACATGTTAAGAAATCTGTAAAGGGAAGGGATTCAGCTCTTTTAAGTGAAAATTGTAACAGTTCCCACATGGTTAAAACTTTTAAGCCACCTGTTGTTCGGAAAGGGAAGTTGGTTGTGGTAGATCTTGCAGGTTCAGAGCGTATTGATAAGTCAGGAAGTGAGGGACATACATTAGAGGAAGCCAAGTCTATTAATCTTTCTTTAAGTGCTTTGGGAAAGTGTATTAATGCACTGGCAGAGAATAGTGCACATGTCCCGGTTCGTGATTCAAAACTTACAAGATTGCTTCGAGATTCATTTGGAGGCACTGCAAGGACTTCATTGGTTGTCACTATTGGTCCATCCCCACGTCATCGTGGAGAGACATCAAGCACCATCATGTTTGGACAAAGGGCTATGAAGGTGGAGAATATGTTGAAAATAAAGGAAGAGTTTGATTATAAAAGTTTGTCTAGAAGGCTTGAGATTCAATTAGACAAACTCATTGTGGAACATGAAAGGCAGCAAAAAGCATTTGAAGATGAGGTTGAAAGGATAACTGTAGAAACACAAAATCATATATCTGAAACTGAAAGAAACTATGCTGATGCGTTGGAGAAAGAAAGATTGAAATATCAGGAAGACTACATGCAATCAATAAAGAAGCTTGAGGAGCAATGGGTGATGAATCAGCGGAAGCATGGCAGTGAAAGAACCACATTTGGGCTCAAAGATGATAACTTTGATAAGACACTTAATGGAGTGGTTCCTGTGGCATCTGCTGCTGAAGAAATAGCAGAGCTCAAAAAATTGCTTCAGAATGAGGCTTCTTTAAGAACAGCTACTGAAGAGGAAGTCAATAACCTTAAGAGCCAAGTAGTTCAGTGGAAAAGGATTGAGGCAGCAGGAAATTCTGAGATATTAAAACTTCGCAAGATGCTGGAAGATGAGGCACACCAAAAAGAGAAACTTGAAGAAGAAATTGCAATACTGCAAAGTCAGTTGTTTCAATTAAGTTTTGAAGCTGATGAGACAAGCAGACAACTTGACAGAGGTGGATCTGGGAAAGTTCTTGGAAATCTGGATTCTTTCGTGTCACAAATTAGGCATTCACAGCTTAGTGATTCAGGAAATGGGGATAAGGCCTCGATAGCTAAACTCTTCGAACAAGTGGGATTGCAAAAGATCTTGTCATTGCTTGAAGCTGAAGATGCTGATGTGCGAATTCATGCTGTAAAAGTGGTAGCAAATCTTGCCGCCGAAGAAACAAATCAAGAGAAGATTGTAGAGGCTGGTGGTCTTTCATCCTTACTGATGCTTCTTAGAAGCTCTGAGGATGAGACTATACAGAGAGTTGCAGCAGGTGCAATTGCGAACCTTGCAATGAATGAAACCAACCAAGAGCTTATAATGTCTCAAGGAGGCATTAGTTTATTTTCCAATGAAAATAAAAATCCAACTATTTAG 2484 42.79 MMIIVAVIQKLTGGSVAISLSLSKTRNFLARISHDSLHFLSKLSRSFFQICSENFTPGVQWLRPFEAWDVKMAASGGYRNGTHKGNMKVDRLVSLSSATKSSSLKSKPSPASPASSGLRRNSTGSVGGAKDDAGVPGRVRVAVRLRPRNAEELVADADFADCVELQPELKRLKLRKNNWDSDTYEFDEVLTEFASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTYTLGRLGEEDTAARGIMVRAMEDILAEISPETDSVSVSYLQLYMETIQDLLDPTNDNISIMEDPKTGDVSLPGATLVEIRDQRSFVELLRLGEAHRFAANTKLNTESSRSHAILMVHVKKSVKGRDSALLSENCNSSHMVKTFKPPVVRKGKLVVVDLAGSERIDKSGSEGHTLEEAKSINLSLSALGKCINALAENSAHVPVRDSKLTRLLRDSFGGTARTSLVVTIGPSPRHRGETSSTIMFGQRAMKVENMLKIKEEFDYKSLSRRLEIQLDKLIVEHERQQKAFEDEVERITVETQNHISETERNYADALEKERLKYQEDYMQSIKKLEEQWVMNQRKHGSERTTFGLKDDNFDKTLNGVVPVASAAEEIAELKKLLQNEASLRTATEEEVNNLKSQVVQWKRIEAAGNSEILKLRKMLEDEAHQKEKLEEEIAILQSQLFQLSFEADETSRQLDRGGSGKVLGNLDSFVSQIRHSQLSDSGNGDKASIAKLFEQVGLQKILSLLEAEDADVRIHAVKVVANLAAEETNQEKIVEAGGLSSLLMLLRSSEDETIQRVAAGAIANLAMNETNQELIMSQGGISLFSNENKNPTI* 828
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4511890 4534148 + Vvi2g461 Vvi2g461 783160

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g461 827 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 771 814 IPR000225 GO:0005515
Vvi2g461 827 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 138 515 IPR027417 -
Vvi2g461 827 ProSitePatterns Kinesin motor domain signature. 381 392 IPR019821 GO:0003777|GO:0005524|GO:0007018
Vvi2g461 827 Coils Coil 646 680 - -
Vvi2g461 827 Gene3D - 616 821 IPR011989 -
Vvi2g461 827 MobiDBLite consensus disorder prediction 98 133 - -
Vvi2g461 827 SMART arm_5 760 801 IPR000225 GO:0005515
Vvi2g461 827 SMART arm_5 719 759 IPR000225 GO:0005515
Vvi2g461 827 MobiDBLite consensus disorder prediction 98 123 - -
Vvi2g461 827 Gene3D Kinesin motor domain 130 511 IPR036961 -
Vvi2g461 827 PANTHER KINESIN-LIKE PROTEIN KIN-UA 120 821 IPR033291 GO:0008017|GO:0032886|GO:0048364
Vvi2g461 827 CDD KISc 138 479 - -
Vvi2g461 827 PRINTS Kinesin heavy chain signature 214 235 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi2g461 827 PRINTS Kinesin heavy chain signature 382 400 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi2g461 827 PRINTS Kinesin heavy chain signature 431 452 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi2g461 827 Coils Coil 541 561 - -
Vvi2g461 827 Pfam Kinesin motor domain 144 481 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi2g461 827 Pfam Armadillo/beta-catenin-like repeat 763 800 IPR000225 GO:0005515
Vvi2g461 827 PANTHER KINESIN-RELATED 120 821 IPR027640 GO:0003777|GO:0007018
Vvi2g461 827 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 730 772 IPR000225 GO:0005515
Vvi2g461 827 SUPERFAMILY ARM repeat 722 818 IPR016024 -
Vvi2g461 827 Coils Coil 597 638 - -
Vvi2g461 827 ProSiteProfiles Kinesin motor domain profile. 138 481 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi2g461 827 SMART kinesin_4 136 489 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi2g461 827 Coils Coil 497 528 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g461 - - - vvi:100246107 1372.07
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g461 . . . . . Bpe07g00141 . . Cmo06g01154 . . . . . . . Cpe05g00275 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma12g00119 . . . Cma06g01129 . Car06g00965 . Cpe08g00491 . Bhi12g00356 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001054 3 5 3 2 3 2 5 2 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 2 2 2 2 5 2 3 80