Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g462 ATGGTCAGATGTGGACATCCTGATGTTCTTGCACAAGTTGCTCGTGGAATTGCAAACTTTGCAAAATGTGAGTCCAGGGCATCAAGTCAAGGAACCAAGAGTGGAAGATCGCTACTTATTGAAGATGGTGCACTTCCATGGATTGTACAAAATGCTAACAATGAGGCCTCACCAATCAGGCGCCATATTGAGCTTGCACTCTGCCATTTAGCACAACATGAAGTGAATGCAAAGGACATGATTAGTGGAGGTGCCCTCTGGGAGTTGGTCCGAATCTCACGAGACTGTTCACGCGAGGACATAAGGACTCTTGCGCATAGGACACTAAATTCTAGCCCCACCTTCCAAACTGAATTGAGGCGACTCCGTATAGAGTGTTGA 381 46.72 MVRCGHPDVLAQVARGIANFAKCESRASSQGTKSGRSLLIEDGALPWIVQNANNEASPIRRHIELALCHLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLNSSPTFQTELRRLRIEC* 127
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4534192 4535347 + Vvi2g462 Vvi2g462 783161

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g462 126 PANTHER CENTROMERE PROTEIN E 1 121 - -
Vvi2g462 126 SUPERFAMILY ARM repeat 4 109 IPR016024 -
Vvi2g462 126 Gene3D - 1 123 IPR011989 -
Vvi2g462 126 PANTHER KINESIN-LIKE PROTEIN 1 121 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g462 - - - vvi:109121857 256.144
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g462 . . Bda06g00057 . . . Bma07g01621 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00360 . . . . . Bda09g00070 . . . . . . . . . . . . Cpe13g00198 Bhi12g00357 . . . . . Lcy12g1744 Cla01g00338 Cam01g0351 Cec01g0347 Cco01g0359 Clacu01g0355 Cmu01g0335 Cre09g2175 Lsi09g00364 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0019360 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 4