Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g464 ATGGCGGCTTCGGGTGGTTACAGAAATGGAACTCACAAGGGCAATATGAAGGTGGATAGGCTGGTCTCCCTCAGTTCCGCCACCAAGTCTTCCTCTCTCAAGTCCAAGCCTTCCCCAGCGTCGCCCGCTTCTTCTGGGCTCCGCCGCAACAGCACCGGCTCTGTCGGTGGAGCAAAGGACGATGCTGGAGTTCCTGGGAGGGTTCGAGTGGCTGTGAGATTGCGACCGCGGAATGCAGAGGAGTCGGTGGCTGATGCTGATTTTGCTGATTGTGTAGAATTGCAGCCAGAGCTTAAAAGGTTAAAACTTCGAAAGAACAATTGGGACTCAGACACCTATGAGTTCGATGAAGTGCTTACAGAGTTTGCATCACAAAAACGTGTATATGAAGTTGTTGCGAAACCTGTTGTGGAGAGTGTTTTGGATGGTTACAATGGAACAGTCATGGCATATGGACAGACTGGTACTGGGAAAACATACACACTTGGGCGACTTGGAGAGGAAGATACTGCTGCGCGTGGAATAATGGTGCGTGCAATGGAGGATATTTTAGCAGAAATTTCTCCAGAGACTGATTCTGTCTCAGTCTCCTATTTGCAGCTTTATATGGAAACCATTCAGGACCTCCTTGATCCTACTAATGACAACATATCTATCATGGAAGACCCGAAAACTGGAGATGTTTCACTACCAGGGGCCACCCTAGTAGAAATCAGGGACCAGCGGAGTTTTGTGGAACTGCTACGGTTAGGGGAAGCTCACCGCTTTGCTGCAAACACAAAATTGAATACCGAATCATCTCGTAGTCATGCTATTTTGATGGTACATGTTAAGAAATCTGTAAAGGGAAGGGATTCAGCTCTTTTAAGTGAAAATTGTAACAGTTCCCACATGGTTAAAACTTTTAAGCCACCTGTTGTTCGGAAAGGGAAGTTGGTTGTGGTAGATCTTGCAGGTTCAGAGCGTATTGATAAGTCAGGAAGTGAGGGACATACATTAGAGGAAGCCAAGTCTATTAATCTTTCTTTAAGTGCTTTGGGAAAGTGTATTAATGCACTGGCAGAGAATAGTGCACATGTCCCGGTTCGTGATTCAAAACTTACAAGATTGCTTCGAGATTCATTTGGAGGCACTGCAAGGACTTCATTGGTTGTCACTATTGGTCCATCCCCACGTCATCGTGGAGAGACATCAAGCACCATCATGTTTGGACAAAGGGCTATGAAGGTGGAGAATATGTTGAAAATAAAGGAAGAGTTTGATTATAAAAGTTTGTCTAGAAGGCTTGAGATTCAATTAGACAAACTCATTGTGGAACATGAAAGGCAGCAAAAAGCATTTGAAGATGAGATTGAAAGGATAACTGTAGAAACACAAAATCATATATCTGAAACTGAAAGAAACTATGCTGATGCGTTGGAGAAAGAAAGATTGAAATATCAGGAAGACTACATGCAATCAATAAAGAAGCTTGAGGAGCAATGGGTGATGAATCAGCGGAAGCATGGCAGTGAAAGAACCACATTTGGGCTCAAAGATGATAACTTTGATAAGACACTTAATGGAGTGGTTCCTGTGGCATCTGCTGCTGAAGAAATAGCAGAGCTCAAAAAATTGCTTCAGAATGAGGCTTCTTTAAGAACAGCTACTGAAGAGGAAGTCAATAACCTTAAGAGCCAAGTAGTTCAGTGGAAAAGGATTGAGGCAGCAGGAAATTCTGAGATATTAAAACTTCGCAAGATGCTGGAAGATGAGGCACACCAAAAAGAGAAACTTGAAGAAGAAATTGCAATACTGCAAAGTCAGTTGTTTCAATTAAGTTTTGAAGCTGATGAGACAAGCAGACAACTTGACAGAGGTGGATCTGGGAAAGTTCTTGGAAATCTGGATTCTTTCATGTCACAAATTAGGCATTCACAGCTTAGTGATTCAGGAAATGGGGATAAGGCCTCGATAGCCAAACTCTTCGAACAAGTGGGATTGCAAAAGATCTTGTCATTGCTTGAAGCTGAAGATGCTGATGTGCGAATTCATGCTGTAAAAGTGGTAGCAAATCTTGCCGCCGAAGATGGTGCACTTCCATGGATTGTACAAAATGCTAACAATGAGGCCTCACCAATCAGGCGCCATATTGAGCTTGCACTCTGCCATTTAGCACAACATGAAGTGAATGCAAAGGACATGATTAGTGGAGGTGCCCTCTGGGAGTTGGTCCGAATCTCACGAGACTGTTCACGCGAGGACATAAGGACTCTTGCGCATAGGACACTAAATTCTAGCCCCACCTTCCAAACTGAATTGAGGCGACTCCGTATAGAGTGTTGA 2325 43.83 MAASGGYRNGTHKGNMKVDRLVSLSSATKSSSLKSKPSPASPASSGLRRNSTGSVGGAKDDAGVPGRVRVAVRLRPRNAEESVADADFADCVELQPELKRLKLRKNNWDSDTYEFDEVLTEFASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTYTLGRLGEEDTAARGIMVRAMEDILAEISPETDSVSVSYLQLYMETIQDLLDPTNDNISIMEDPKTGDVSLPGATLVEIRDQRSFVELLRLGEAHRFAANTKLNTESSRSHAILMVHVKKSVKGRDSALLSENCNSSHMVKTFKPPVVRKGKLVVVDLAGSERIDKSGSEGHTLEEAKSINLSLSALGKCINALAENSAHVPVRDSKLTRLLRDSFGGTARTSLVVTIGPSPRHRGETSSTIMFGQRAMKVENMLKIKEEFDYKSLSRRLEIQLDKLIVEHERQQKAFEDEIERITVETQNHISETERNYADALEKERLKYQEDYMQSIKKLEEQWVMNQRKHGSERTTFGLKDDNFDKTLNGVVPVASAAEEIAELKKLLQNEASLRTATEEEVNNLKSQVVQWKRIEAAGNSEILKLRKMLEDEAHQKEKLEEEIAILQSQLFQLSFEADETSRQLDRGGSGKVLGNLDSFMSQIRHSQLSDSGNGDKASIAKLFEQVGLQKILSLLEAEDADVRIHAVKVVANLAAEDGALPWIVQNANNEASPIRRHIELALCHLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLNSSPTFQTELRRLRIEC* 775
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4544175 4560881 + Vvi2g464 Vvi2g464 783163

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g464 774 CDD KISc 67 408 - -
Vvi2g464 774 MobiDBLite consensus disorder prediction 1 62 - -
Vvi2g464 774 ProSitePatterns Kinesin motor domain signature. 310 321 IPR019821 GO:0003777|GO:0005524|GO:0007018
Vvi2g464 774 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 67 444 IPR027417 -
Vvi2g464 774 SMART kinesin_4 65 418 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi2g464 774 PANTHER KINESIN-RELATED 704 766 IPR027640 GO:0003777|GO:0007018
Vvi2g464 774 PANTHER KINESIN-RELATED 49 699 IPR027640 GO:0003777|GO:0007018
Vvi2g464 774 Coils Coil 526 567 - -
Vvi2g464 774 PANTHER KINESIN-LIKE PROTEIN KIN-UA 49 699 IPR033291 GO:0008017|GO:0032886|GO:0048364
Vvi2g464 774 PANTHER KINESIN-LIKE PROTEIN KIN-UA 704 766 IPR033291 GO:0008017|GO:0032886|GO:0048364
Vvi2g464 774 Coils Coil 575 609 - -
Vvi2g464 774 Gene3D - 625 770 IPR011989 -
Vvi2g464 774 SUPERFAMILY ARM repeat 648 757 IPR016024 -
Vvi2g464 774 ProSiteProfiles Kinesin motor domain profile. 67 410 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi2g464 774 Coils Coil 470 490 - -
Vvi2g464 774 Gene3D Kinesin motor domain 59 440 IPR036961 -
Vvi2g464 774 PRINTS Kinesin heavy chain signature 143 164 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi2g464 774 PRINTS Kinesin heavy chain signature 311 329 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi2g464 774 PRINTS Kinesin heavy chain signature 360 381 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi2g464 774 Coils Coil 426 457 - -
Vvi2g464 774 MobiDBLite consensus disorder prediction 21 52 - -
Vvi2g464 774 Pfam Kinesin motor domain 73 410 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g464 - - - vvi:100852786 1284.63
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g464 . . . . . . . . . . . Cma15g01176 . Car15g01064 . . . . . . . . . . . . . . . . . Cone8ag0352 . . . . . Chy09g01147 . . . . . . . . . . . Cmo15g01237 . . Car06g00966 . . . Bhi12g00358 . . . . . . . . . . . . . . . . Cme09g01679
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001054 3 5 3 2 3 2 5 2 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 2 2 2 2 5 2 3 80