Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g469 ATGGCAGTGCATCTTCACTCCACGCCCTCTTCTTCTTCATCTCTACACTCCCGAACCAGAGTCTCTCAGCCGCCTCTTAGTTGCGCGACCAAGCTCTTTTCAGGATTGAAGCTTCAATCTGCAAGTACGTTTGGTACTGGAAAGCCGAACTTGACAGTTGAATTCTTCAACAAAGTTCATAAGAGCGTCCAATCCAGGACTAGTGACAGTAAATCGACACGAGCACGTGTTCGAATGATGCCTATAGGGACCCCAAGAGTGCCCTATAGAACTCCTGGTGAGGGAACTTGGCAATGGGTTGATTTGTGGAATGCCCTGTACCGGGAACGAGTTATCTACATTGGACAACATATAGATGAAGAATTTAGCAACCAACTATTAGCCACGATGTTGTACCTTGACAGCATTGAATCTTCCAAAAGGATGTTTTTTTATATTAACAGTCCTGGTGGAGATCTTACTCCAAGCTTGGCTATATATGATACCATGCAAAGCTTGAAAAGTCCTGTTGGCACCAATTGTTTGGGTTTTGCATATAACCTAGCTACCTTTCTTCTAGCAGCTGGAGAAAAGGGTAATCGCTTGGCAATGCCTCTTTCAAGGATTGCACTACAATCACCAGCTGGAGCTGCTCGTGGTCAGGCTGATGACATTCGTAATGAAGCAAATGAGCTTCTTAGAATCAGAGATTACCTTTTTTCAGAGTTGGCCAATAAGACGGGCCAGCCCATCGATAAGATTAACAAGGATTTAAGGCGGATGAAACGCTTCAATGCCCAGGAGGCTCTTGAATATGGGCTCATTGATCGTATATTAAGGCCACCCCGAGTTAAAGCTGATGCACCACGCAAAGATGCTGGAACTGGTCTCGGTTAG 876 45.21 MAVHLHSTPSSSSSLHSRTRVSQPPLSCATKLFSGLKLQSASTFGTGKPNLTVEFFNKVHKSVQSRTSDSKSTRARVRMMPIGTPRVPYRTPGEGTWQWVDLWNALYRERVIYIGQHIDEEFSNQLLATMLYLDSIESSKRMFFYINSPGGDLTPSLAIYDTMQSLKSPVGTNCLGFAYNLATFLLAAGEKGNRLAMPLSRIALQSPAGAARGQADDIRNEANELLRIRDYLFSELANKTGQPIDKINKDLRRMKRFNAQEALEYGLIDRILRPPRVKADAPRKDAGTGLG* 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4625181 4628502 - Vvi2g469 Vvi2g469 783168

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g469 291 CDD S14_ClpP_2 101 271 IPR001907 GO:0004176|GO:0004252|GO:0006508
Vvi2g469 291 Pfam Clp protease 98 273 IPR023562 -
Vvi2g469 291 PRINTS Clp protease catalytic subunit P signature 101 116 IPR001907 GO:0004176|GO:0004252|GO:0006508
Vvi2g469 291 PRINTS Clp protease catalytic subunit P signature 141 161 IPR001907 GO:0004176|GO:0004252|GO:0006508
Vvi2g469 291 PRINTS Clp protease catalytic subunit P signature 172 189 IPR001907 GO:0004176|GO:0004252|GO:0006508
Vvi2g469 291 PRINTS Clp protease catalytic subunit P signature 193 212 IPR001907 GO:0004176|GO:0004252|GO:0006508
Vvi2g469 291 PRINTS Clp protease catalytic subunit P signature 250 269 IPR001907 GO:0004176|GO:0004252|GO:0006508
Vvi2g469 291 MobiDBLite consensus disorder prediction 1 21 - -
Vvi2g469 291 SUPERFAMILY ClpP/crotonase 94 276 IPR029045 -
Vvi2g469 291 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 11 285 IPR023562 -
Vvi2g469 291 Gene3D - 84 279 - -
Vvi2g469 291 Hamap ATP-dependent Clp protease proteolytic subunit [clpP]. 83 275 IPR001907 GO:0004176|GO:0004252|GO:0006508
Vvi2g469 291 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT-RELATED PROTEIN 2, CHLOROPLASTIC 11 285 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g469 K01358 clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] - vvi:100256891 569.696
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g469 . . Bda06g00053 . . Bpe07g00146 . . . Cmo16g01198 Cma02g01509 Cma15g01171 . Car15g01060 . Cpe14g00951 . . . . . . . . . . . . . . . Cone8ag0358 Cone12ag0350 . . . Csa05g00366 Chy09g01142 . . . . . . . . Bma12g00130 . . Cmo15g01233 . Cma16g01147 . Car16g01144 . . Bhi12g00364 . . . . . . . . . . . . . Lsi09g00370 . . Cme09g01674
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002594 3 2 3 4 3 1 2 1 1 1 1 1 1 2 2 3 1 4 1 1 2 2 2 1 2 2 2 4 3 1 59