Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g47 ATGCCCCTTTATTTTCAACTTCTTACACGAATGACTTCTTTTAGCAGCTTATCGTTATTGAATGTGATTCGGAATAGCGCTTCCATGAAGTGCCGATCCGTAGCGTGCATCTGGTCCGGTGCTCCGCCGTACCACAGAATAACTGCCGCCGCAGTATTGACCAGGCCGCCGAGTCTCTACACCGGCGGATCCGATGGCTCAATCGTCTGGTGGAATCTATCCGGCACCGATTCCGACCCGGAAATTAAACCAATTGCTATGTTGTGTGGTCATGCTGCACCCCTAGCTGATCTCGGCATTTGTTTTCCTATTGTGGACAATTCAAGTAATGTGAAAGTAAAGTCTATTCCAGCTGATCATGGCGCTTTAATAAGTGCATGTACTGATGGTGTGCTGTGCACATGGAGCAGAGGGAGTGGACATTGCAGGCGCAGAAGGAAAATGCCACCTTGGGTGGGCAGTCCATCCATGATTCGAGCATTGCCTACCAACCCAAGATATGTATGTATTGCCTGTAGTTTCATGGATGCTGTCCATTTATTTGACCAACATTCTGTTGATTTGGTTGAAGGGGGTGAGGCTTCCTTGGATAGAGAGTCTCAATATAGAAAACCCCCAAAATGCACTGTAGTTATTGTAGATTCATATAGCCTTACTATTGTCCAAACTGTTTTTCATGGGAATTTGTCTATTGGGCCATTGAAGTTCATGGCTGTAATTTTGTCCCCTGAGAATTGTGAGATGCAATCCGCCCTCATGGTTGATCCATATGGTAAGCTGCAATCGGTTCCTATACTAAAGGACCCCACCTTAGGCGGGGAGAGTGGGGCTGGTTTGCATAAAAGTTCTTCTCATTTGGATACAACTATCTGGGAAGATGGATTGAGTGAGGGGGGTCCGGTGGTGTCAATTGCAACCCATGGACAGTTTTTTGTTCTTGTCTATAGAACCTGTTGTATATTTAGGCTATTGGCTAGTGGAACTGCAATTGGAAAGATTTCTTTTGTGGATAATCACCTCTGTTTCGAAGATGGTTCAACTCACTTGCACATTGTAGGGGGCATGTTTCTTGAAGGTAATGATGCTAGTAGTATGCCGAGGTCAGAAGATCCCTGTGACATAACTGAAGAAAATTTTATTGTGTGGAATGATAGAGGTTCAGCTATTGTGTATTCTGTATCATATTTGGACAATTTATTTAATTTTCAGCCTCTTTGTGAGATCCCTGCTGTTTCCCATCCCCATGATGCAAGGCTATCAATATCTTTCATCCAATTGAACCATTATCTTTTTCGAATTGAATCCGTTTGCTTTCACATTGAGGAACCTTTGCTGTGGAAACCTCTTGTTACAATCTGGTCTCTATATCAACAACATGATGACAATAGAAAGTTGTGTCCTCAATGCAAAATGGTTGGAAGAGGTGGTCTTTTTACAGACTCGGTTGTGGGCTTTGCTTCTTTTCATAAATCTGAGGGTCATGGGCATGATGTTGAAAAAATGAATAATATCTGCAGAGATGATGAAAAATATAGTTTTGTGCGGAAGGAGCAGGTTGTATCTTCTTCCATGGTTATCTCTGAAAACTTCCATACACCATATGCTGTTGTGTATGGCTTCTATAGTGGTGAAATAGAAGTTGCTCGATTTGATACATTTTTCCAACTACTAGAGTCACATGGTCAAAGTCCATGTGTTGAAGTGGATTCACATGCATCAAAACAATATTTTTTGGGACATACTGGTGCTGTACTATGTTTGGCTGCACATCGAATGGTGGGCAACTCCAACGGATGGAATTTTAATCATGTTTTAGTATCAGGAAGCATGGACTGCACGATTCGTGTATGGGATCTTGATACTAGCAATCTCATTACAGTGATGCACCAACACGTAGCTTCAGTACGCCAAATAATCCTTTGCCCACCTAGGACTGACCGTCCATGGAGTGATTGCTTTCTGTCTGTTGGGGAGGACTTTTGTGTTGCTCTCACTTCTCTTGAGACTTTGCGGGTGGAGAGGATGTTTCCTGGACACCCTAGCTATCCTGCAAAAGTTGTGTGGGATGGTGCTAGAGGTTATATCGCATGTCTCTGCCGGAACTATTCAGGGACATCTGATGCAGTAGATGTTTTGTTCATTTGGGACATGAAGACAGGTGTTCGAGAGCGCGTTCTTCGTGGGACAGCATCCCATTCAATGTTCGATAATTTTTTCAAAGGAATCAACATGAATTCCATTTCCGGCAGTGTATTGAATGGAGATACTTCAGCTTCCTCGTTACTTCTTCCAATAATTGAAGATGCAAGCTTGTTACAATCTCATTTTAAACATTCAGTGAAGGGGATCGCTTTGTCAAATACAATTACGACAAATATATCTGAGCCCAGTACTTCCCAAGCACATGTTAATGAAGGAAGCTCTATGAAACTAATATCCACTTCATCATCAGTCTTTCAAGGCTACAAGCATCCCGTCAAATGCTCTTGTCCATTCCCTGGAATTGCTACTCTGAGTTTTGACCTTGCATCCTTGATGTCTCATTGTCTGAAGCATGAGTTCATAGGAAATGGTGGTGATAAGCAAGACAATACCCATATGAGAGAACCGGGAACTGAGACACTGAAACCCCATCACATGACTGCAGATGATGGGTCTGATTTAAATGGGACCTTGAACAATACTATAGAAGGGCATGACTGGATTAGTTCACTTGAAAGATACTTACTCCAATTCTCCTTGTCCTTTTTGCACTTGTGGGATGTAGATTCTGAGCTTGATAAGTTGCTAATAACTGACATGAAGTTAGAGAGACCACAGAAATTTATTGTATCCCCTGGTTTCCAAGGGGACAGAGGTTCATTAACTTTGACATTCCCTGGTTTGGGTGCTAGCCTCGAGCTTTTGAAATCATCATCAGAGTTTTGTGCGATGAGGTCACTAACAATGGTGTCCCTTGCCCAACGCATAGTTAGCTTGTCTCACTCTAGTTCAGCAGGCTGCAGTGCTTTAGCAGCATTCTATACTCGGCATTTTGCAGAGAAAATTCCTGATATAAAACCACCTTCACTCCAGCTTTTGGTGAGTTTTTGGCAAGATGAAAGTGAACATGTACGTATGGCTGCACGCTCTTTATTTCATTGTGCTGCTGCACGGGCTATTCCACCTCCCCTATGTAGTCGAAAAGCAATTGACCATACAAAACTTATGATCTCCACCAATAGCAAGAGGGCAAATGAAGATGGAAGTTCAAACATAGAAAATGCATATAGGGATGGTCTGAATTCTGATACACCCCCTGAAACACCAGGGGATTCTCAGGTTGAGGAATGTAAAATACTTGCATGGCTAGAATCATTTGAAGAGCAAGATTGGATTTCTTGTGTTGGGGGAACAAGCCAAGATGCAATGACATCTCATATTATCGTGGCAGCGGCACTGGCAATTTGGTATCCTAGCCTTGTTAAGCAAAATCTTGCTATGCTGACTGTTCATCCATTAATGAAGTTGGTTATGGCCATGAATGAGAAATATAGTTCCACAGCAGCAGAGCTCCTGGCAGAAGGTATGGAGAGTACATGGAAGGAGTGCATTGGTTCTGAAATACCTCGTCTGGTTGGGGATATATTCTTCCAAATAGAGTGTGTAAGTGGTACATCTGGCAATTCTGCGGCTCAAAATCCTGCTATCCCTGTCACTATTCGGGAGACTTTGGTTGGGGTTCTTCTTCCAAGCTTAGCCATGGCTGATATACCAGGGTTTCTAAGTGTAATAGAGAGCCAAATTTGGTCTACTGCATCTGATTCACCTGTTCATTTAGTATCCCTCATGACTCTCATCAGGGTTGTGCGTGGTTCTCCAAGAAACTTAATTCAGTCCCTTGATAAGGTGGTTAACTTCATTTTACAAACTATGGACCCTGGAAATTCAGTCATGCGCAGGACTTGCCTTCAAAGTTCAATGACAGCACTGAAAGAAGTTGTTCGTGTATTCCCTATGGTAGCACAGAATGACTCTTCAACACGTCTGGCTGTTGGGGATGCAATTGGAGAGATTAATAATGCTAGCATTCGGATATATGACTTGCAAAGTGTGACAAAAATAAAGGTTCTGGATGCAAGTGCTCCTCCTGGACTTCCAAGTTTGCTCTCAGGAGCTTCAGAAACAACACTGACCACTGCAATTTCTGCTCTGAGCTTTTCACCGGATGGAGAGGGGCTAGTTGCCTTTTCTGAGCATGGATTGATGATTAGATGGTGGTCCTTGGGGTCAGCATGGTGGGAGAAACTCGGTCGAAATTTCGTTCCTGTCCAATACACTAAACTGATTTTTGTTCCTCCCTGGGAGGGAATGTCACCTAATTCTTCTCGGTCAAGCGTAATGGCAAGCATACTGGGACATGATAGGCAGGCCAATTCACAGGAGAATACTAAGGGATCAGGGGACATGGACTGTTTGAAAGTCTTGATCCATAATATTGACCTCTCTTATCGGCTAGAATGGGTTGGTGAACGCAGAGTGCTAATCTTGAGGCATGGCCGTGAATTAGGCACATTCCAGTTATAA 4566 43.17 MPLYFQLLTRMTSFSSLSLLNVIRNSASMKCRSVACIWSGAPPYHRITAAAVLTRPPSLYTGGSDGSIVWWNLSGTDSDPEIKPIAMLCGHAAPLADLGICFPIVDNSSNVKVKSIPADHGALISACTDGVLCTWSRGSGHCRRRRKMPPWVGSPSMIRALPTNPRYVCIACSFMDAVHLFDQHSVDLVEGGEASLDRESQYRKPPKCTVVIVDSYSLTIVQTVFHGNLSIGPLKFMAVILSPENCEMQSALMVDPYGKLQSVPILKDPTLGGESGAGLHKSSSHLDTTIWEDGLSEGGPVVSIATHGQFFVLVYRTCCIFRLLASGTAIGKISFVDNHLCFEDGSTHLHIVGGMFLEGNDASSMPRSEDPCDITEENFIVWNDRGSAIVYSVSYLDNLFNFQPLCEIPAVSHPHDARLSISFIQLNHYLFRIESVCFHIEEPLLWKPLVTIWSLYQQHDDNRKLCPQCKMVGRGGLFTDSVVGFASFHKSEGHGHDVEKMNNICRDDEKYSFVRKEQVVSSSMVISENFHTPYAVVYGFYSGEIEVARFDTFFQLLESHGQSPCVEVDSHASKQYFLGHTGAVLCLAAHRMVGNSNGWNFNHVLVSGSMDCTIRVWDLDTSNLITVMHQHVASVRQIILCPPRTDRPWSDCFLSVGEDFCVALTSLETLRVERMFPGHPSYPAKVVWDGARGYIACLCRNYSGTSDAVDVLFIWDMKTGVRERVLRGTASHSMFDNFFKGINMNSISGSVLNGDTSASSLLLPIIEDASLLQSHFKHSVKGIALSNTITTNISEPSTSQAHVNEGSSMKLISTSSSVFQGYKHPVKCSCPFPGIATLSFDLASLMSHCLKHEFIGNGGDKQDNTHMREPGTETLKPHHMTADDGSDLNGTLNNTIEGHDWISSLERYLLQFSLSFLHLWDVDSELDKLLITDMKLERPQKFIVSPGFQGDRGSLTLTFPGLGASLELLKSSSEFCAMRSLTMVSLAQRIVSLSHSSSAGCSALAAFYTRHFAEKIPDIKPPSLQLLVSFWQDESEHVRMAARSLFHCAAARAIPPPLCSRKAIDHTKLMISTNSKRANEDGSSNIENAYRDGLNSDTPPETPGDSQVEECKILAWLESFEEQDWISCVGGTSQDAMTSHIIVAAALAIWYPSLVKQNLAMLTVHPLMKLVMAMNEKYSSTAAELLAEGMESTWKECIGSEIPRLVGDIFFQIECVSGTSGNSAAQNPAIPVTIRETLVGVLLPSLAMADIPGFLSVIESQIWSTASDSPVHLVSLMTLIRVVRGSPRNLIQSLDKVVNFILQTMDPGNSVMRRTCLQSSMTALKEVVRVFPMVAQNDSSTRLAVGDAIGEINNASIRIYDLQSVTKIKVLDASAPPGLPSLLSGASETTLTTAISALSFSPDGEGLVAFSEHGLMIRWWSLGSAWWEKLGRNFVPVQYTKLIFVPPWEGMSPNSSRSSVMASILGHDRQANSQENTKGSGDMDCLKVLIHNIDLSYRLEWVGERRVLILRHGRELGTFQL* 1522
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 520830 533824 - Vvi2g47 Vvi2g47 782746

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g47 1521 SMART WD40_4 570 618 IPR001680 GO:0005515
Vvi2g47 1521 SMART WD40_4 621 666 IPR001680 GO:0005515
Vvi2g47 1521 SMART WD40_4 669 716 IPR001680 GO:0005515
Vvi2g47 1521 SMART WD40_4 33 72 IPR001680 GO:0005515
Vvi2g47 1521 SMART WD40_4 1384 1421 IPR001680 GO:0005515
Vvi2g47 1521 ProSiteProfiles Trp-Asp (WD) repeats profile. 605 627 IPR001680 GO:0005515
Vvi2g47 1521 PANTHER RABCONNECTIN-3B, ISOFORM A 29 1521 - -
Vvi2g47 1521 MobiDBLite consensus disorder prediction 1074 1092 - -
Vvi2g47 1521 Gene3D - 22 203 IPR015943 GO:0005515
Vvi2g47 1521 SUPERFAMILY WD40 repeat-like 45 728 IPR036322 GO:0005515
Vvi2g47 1521 PANTHER RABCONNECTIN-3B, ISOFORM A 29 1521 - -
Vvi2g47 1521 SUPERFAMILY WD40 repeat-like 1336 1424 IPR036322 GO:0005515
Vvi2g47 1521 ProSitePatterns Trp-Asp (WD) repeats signature. 605 619 IPR019775 -
Vvi2g47 1521 SUPERFAMILY ARM repeat 984 1356 IPR016024 -
Vvi2g47 1521 MobiDBLite consensus disorder prediction 1074 1106 - -
Vvi2g47 1521 Gene3D - 503 820 IPR015943 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g47 K24738 WDR7; rabconnectin-3b - vvi:100260315 3008.78
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g47 . Blo03g00223 Bda06g00120 . . Bpe07g00097 . . . . . . . . . . . . . . . . . . Cla07g00745 Cam07g0798 Cec07g0863 Cco07g0835 Clacu07g0778 Cmu07g0786 Cre07g1139 . . Cone6ag0814 Cone9ag0813 . . . Cme07g01612 . . . . . . . Bma12g00068 . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00613 Chy07g01198 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007130 1 2 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 3 1 37