Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g473 ATGGGTGGGATTTCCATTCATGGTCAGGTTCAGAAATTCGGGTTTAGTTGTGGTGGTGATGGGATTTATGTGGAGACTGCTCTGGTGGATTTTTACTGCAAACTGGGTGATATGGAGATTGCACGGAAGATGTTTGATGAAATGGCTGAGAGGAATGTGGTTTCGTGGAATTCGATGTTAGCTGGGTATCTGAAAGCAGGGGATATGGAAAAGGCGTCATCGTTGTTTCAACAAATGCCCGAGAGGAATTTCGCTTCTTGGAATGCGATGATTAGTGGGCATGTGGAGTTTGGGGACATAGATTCTGCAAGAAGCTTTTTTGATGCAATGCCGCAGAAAAATAATGTTTCTTGGATGACTATGATTTCTGGGTACTCAAAATGTGGGGATGTTGATTCTGCATGCGAACTATTTGATCAGGTCGGTGGGAAAGATCTGCTCTTATTTAATGCCATGATAGCTTGCTATGCTCAAAATAGTAGACCGAATGAAGCTCTTAATCTATTTAACAATATGCTTAATCCATATGTAAATGTTCAACCAGATGAGATGACTTTGGCTAGTGTTATATCTGCATGTTCTCAGTTAGGAGACTTGAGATTTGGGCCTTGGATTGAGTCATATATGAGAAGACTTGGAATTGAAATGGATGGTCATTTGGCCACTGCTTTACTTGACTTGTATGCAAAGTGTGGAAGCATTGATAAGGCATATGAATTGTTCCATGGTTTGAGAAAGAAGGATTTAGTTGCTTATACTGCAATGATCTTGGGGTGTGGCATAAATGGTAAAGCTATTGATGCAATCAAGTTGTTTGATGAGATGGTAGATGCCCAGATTTTCCCAAATTCAATCACCTTCATTGGGCTATTAACTGCCTATAACCATGCTGGTTTGGTTGAAGAAGGCTACCGTTGCTTTACCTCCATGAAAAAGTATAATCTTGTTCCTTCGGTTGATCATTATGGAATCATGGTTGATCTTTTTGGTAGGGCAGGAAGGCTACAAGAAGCACTTGAGCTGATAAAGAGTATGCCCATGCAGCCTCATGCTGGGGTTTGGGGAGCTTTGCTTCTTGCTTGTAGGTTGCATAATAATGTTGAGTTTGGGGAGATTGCAGCTCAGCATTGCTTCGAATTGGAGCCTGATACAACTGGTTATCGTTCTCTTCTTTCCAATATTTACGCATCTGGTGAGAGGTGGGATGATGTCAAGAGATTGAGAAAGGTCACGAAGGAGAAGGGATTTTCCAAAATACCTGGTTGCAGTTGGATGGAATCTGCTTGA 1287 41.57 MGGISIHGQVQKFGFSCGGDGIYVETALVDFYCKLGDMEIARKMFDEMAERNVVSWNSMLAGYLKAGDMEKASSLFQQMPERNFASWNAMISGHVEFGDIDSARSFFDAMPQKNNVSWMTMISGYSKCGDVDSACELFDQVGGKDLLLFNAMIACYAQNSRPNEALNLFNNMLNPYVNVQPDEMTLASVISACSQLGDLRFGPWIESYMRRLGIEMDGHLATALLDLYAKCGSIDKAYELFHGLRKKDLVAYTAMILGCGINGKAIDAIKLFDEMVDAQIFPNSITFIGLLTAYNHAGLVEEGYRCFTSMKKYNLVPSVDHYGIMVDLFGRAGRLQEALELIKSMPMQPHAGVWGALLLACRLHNNVEFGEIAAQHCFELEPDTTGYRSLLSNIYASGERWDDVKRLRKVTKEKGFSKIPGCSWMESA* 429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4666523 4667903 + Vvi2g473 Vvi2g473 783172

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g473 428 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 52 86 IPR002885 -
Vvi2g473 428 Pfam PPR repeat family 51 84 IPR002885 -
Vvi2g473 428 Pfam PPR repeat family 146 193 IPR002885 -
Vvi2g473 428 Pfam PPR repeat family 247 294 IPR002885 -
Vvi2g473 428 PANTHER OS08G0162200 PROTEIN 49 83 - -
Vvi2g473 428 PANTHER OS08G0162200 PROTEIN 2 49 - -
Vvi2g473 428 PANTHER OS08G0162200 PROTEIN 81 427 - -
Vvi2g473 428 TIGRFAM PPR: pentatricopeptide repeat domain 149 173 IPR002885 -
Vvi2g473 428 TIGRFAM PPR: pentatricopeptide repeat domain 26 54 IPR002885 -
Vvi2g473 428 TIGRFAM PPR: pentatricopeptide repeat domain 250 283 IPR002885 -
Vvi2g473 428 TIGRFAM PPR: pentatricopeptide repeat domain 86 114 IPR002885 -
Vvi2g473 428 TIGRFAM PPR: pentatricopeptide repeat domain 222 250 IPR002885 -
Vvi2g473 428 TIGRFAM PPR: pentatricopeptide repeat domain 54 84 IPR002885 -
Vvi2g473 428 TIGRFAM PPR: pentatricopeptide repeat domain 286 319 IPR002885 -
Vvi2g473 428 TIGRFAM PPR: pentatricopeptide repeat domain 322 345 IPR002885 -
Vvi2g473 428 TIGRFAM PPR: pentatricopeptide repeat domain 116 140 IPR002885 -
Vvi2g473 428 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 114 148 IPR002885 -
Vvi2g473 428 Gene3D Tetratricopeptide repeat domain 294 379 IPR011990 GO:0005515
Vvi2g473 428 Gene3D Tetratricopeptide repeat domain 205 293 IPR011990 GO:0005515
Vvi2g473 428 Gene3D Tetratricopeptide repeat domain 112 204 IPR011990 GO:0005515
Vvi2g473 428 Gene3D Tetratricopeptide repeat domain 4 111 IPR011990 GO:0005515
Vvi2g473 428 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 283 317 IPR002885 -
Vvi2g473 428 Pfam E motif 364 426 IPR046848 -
Vvi2g473 428 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 248 282 IPR002885 -
Vvi2g473 428 SUPERFAMILY HCP-like 31 140 - -
Vvi2g473 428 PANTHER OS07G0578800 PROTEIN-RELATED 81 427 IPR045215 GO:0003723|GO:0009451
Vvi2g473 428 PANTHER OS07G0578800 PROTEIN-RELATED 49 83 IPR045215 GO:0003723|GO:0009451
Vvi2g473 428 PANTHER OS07G0578800 PROTEIN-RELATED 2 49 IPR045215 GO:0003723|GO:0009451
Vvi2g473 428 Pfam PPR repeat 321 346 IPR002885 -
Vvi2g473 428 Pfam PPR repeat 86 114 IPR002885 -
Vvi2g473 428 Pfam PPR repeat 116 140 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g473 - - - vvi:100260606 843.573
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g473 . . . . . . . Bma14g00564 . . . Cma15g01168 . Car15g01057 . . . . . . . . . . . . . . . . . . . . . . Csa05g00369 Chy09g01141 . Blo03g00389 . Bda07g00518 . . Bpe11g00705 . . . . Cmo15g01230 . . . . . . Bhi12g00368 . . Lac11g2208 Hepe06g1629 . . Cla01g00344 . . . . . . . . . Cme09g01672
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010341 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 1 1 1 1 1 1 1 2 1 1 31