Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g48 ATGGCGGTCGAACTTGAGCGCAAGGCAGGTGTTGCTTTCATCGATGAGGACTACAAACTCGCCGTCGATCTCTTCTCCAAGGCCCTTAAGATCAGACCTAACAATGCCGAACTCCTCGCCAGCAGAGCTCAGGCGAACATCATGCTCCATGATTATCTTGAGGCTGTCGGCGATGCAATCAAGGCGATTCAGTTGGATCCTTCAATGGCGAAGGCGTATCTGCGGAAAGGCATTGCTTGTTTTAAGCTTGAAGAATATCAAACTGCCAAGGTCGCCCTTGAAAAAGGTGTTCGATTTGCACAAAATGATCCAAGGTTTGCCAAGTTGATTAAAGAATGTAACGATTGTATTGCCGAGCAATATGATATGAAATTGGGATGTATTTTCTTAAAAAGTTGGAAAAGAGTACTGATTATAGTGCCGTCCTCCCCAAGCATGCACACACGAATGAGCTTTACAAAGTTGGAAAATGCTAGTATAACTGTTGGACGTGGTGCATCCACAGCATTAGCAAAACCAAAATACAGGTTGCATGAATACTACCAGAAGCCTGAGGAAGTGGTTGTGACAATATTTGCAAAGGGTATACCAGAAAATAACGTGGTCGTTCACTTTGCTGTACAGACATTAAGTGTTGCCATTGAAGTTCCTGGTCTGACTCCATATTATCTTCATCTTCGATTATTTGGAAAGATCATACCTGATAACAGCAGATATGCAGTAATGTCCACCAAAGTGGAGATCCGCCTTGCCAAAGCTGAGGCCCTGAACTGGCCATCTCTTGAAATTAGCGACAAAGGTACAGATCCCAAAAAGCTTCAAATGCCATCTGCTGTAGATCAGAGGCCTACCAATCCATCTTCAAAAGCAAAAGTGATAGATTGGGATAAGTTGCAGGCCCAAATTGAGGAGGAGGAAAAAGAAGAGGAGTTGAAAGATGATGCAACTAGAAATGCAGACACTCAGAGGACTATGAACAAAAAAACTTGTGAGCCTCATCTGTCTCCTTATCCTTAA 1017 43.36 MAVELERKAGVAFIDEDYKLAVDLFSKALKIRPNNAELLASRAQANIMLHDYLEAVGDAIKAIQLDPSMAKAYLRKGIACFKLEEYQTAKVALEKGVRFAQNDPRFAKLIKECNDCIAEQYDMKLGCIFLKSWKRVLIIVPSSPSMHTRMSFTKLENASITVGRGASTALAKPKYRLHEYYQKPEEVVVTIFAKGIPENNVVVHFAVQTLSVAIEVPGLTPYYLHLRLFGKIIPDNSRYAVMSTKVEIRLAKAEALNWPSLEISDKGTDPKKLQMPSAVDQRPTNPSSKAKVIDWDKLQAQIEEEEKEEELKDDATRNADTQRTMNKKTCEPHLSPYP* 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 537379 544068 + Vvi2g48 Vvi2g48 782747

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g48 338 CDD p23_CS_SGT1_like 179 262 - -
Vvi2g48 338 SMART tpr_5 70 103 IPR019734 GO:0005515
Vvi2g48 338 SMART tpr_5 36 69 IPR019734 GO:0005515
Vvi2g48 338 SMART tpr_5 2 35 IPR019734 GO:0005515
Vvi2g48 338 Pfam CS domain 178 252 IPR007052 -
Vvi2g48 338 SUPERFAMILY TPR-like 5 148 IPR011990 GO:0005515
Vvi2g48 338 ProSiteProfiles CS domain profile. 173 262 IPR007052 -
Vvi2g48 338 SUPERFAMILY HSP20-like chaperones 178 269 IPR008978 -
Vvi2g48 338 Coils Coil 298 318 - -
Vvi2g48 338 MobiDBLite consensus disorder prediction 266 338 - -
Vvi2g48 338 Gene3D Tetratricopeptide repeat domain 1 124 IPR011990 GO:0005515
Vvi2g48 338 Coils Coil 83 103 - -
Vvi2g48 338 PANTHER PROTEIN SGT1 HOMOLOG 1 318 IPR044563 GO:0051087
Vvi2g48 338 ProSiteProfiles TPR repeat profile. 2 35 IPR019734 GO:0005515
Vvi2g48 338 PANTHER PROTEIN SGT1 HOMOLOG A 1 318 - -
Vvi2g48 338 Gene3D - 168 277 IPR008978 -
Vvi2g48 338 MobiDBLite consensus disorder prediction 296 327 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g48 K12795 SUGT1, SGT1; suppressor of G2 allele of SKP1 - vvi:100265531 508.449
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi2g48 Vvi16g790 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g48 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0275 . . . . . . . . . Bda07g01908 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0069973 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1