Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g487 ATGAAAGGCGTCTTTTCGGCGCCAGGAGATTACATCCACTTCAAGTCTCAGGTCCCTCTTCACAAGATCCCCATTGGCACAAAGCAGTGGCGGTATTATGATTTTGGTCCAAAAGTGGTCCCTCCACTTATTTGTCTTCCTGGGACAGCAGGAACTGCAGATGTCTATTACAAACAGATAATGTCATTGTCCATAAAGGGTTACCGGGTGATCTCTGTTGATATTCCTCGCGTATGGAACCATCATGAGTGGATTCAAGCATTTGAAAAGTTTTTGGATGCTATTGATGTGCACCATATACATCTTTATGGCACATCCCTTGGAGGCTTCCTGGCACAACTTTTTGCTCAGCATCGTCCAAGACGGGTTAGGTCGTTGATTCTCTCAAATTCATTTTTGGAGACACGCAGTTTCTCATCTGCAATGCCATGGGCCCCTATTGTCAGTTGGACCCCTTCTTTTTTGCTGAAGAGATATGTCTTAACGGGAATTCCAGATGGCCCCCATGAACCATTTATTGCAGATTCAGTAGACTTTGTTGTTTCCCAGGTTGAAACACTCTCAAGAGAGGACTTGGCCTCCAGGTTGACCTTGACTGTTGATGCTGCTTCCATTGGACCTCTTCTTCTCTCAGATTCATTCATCACTCTAATGGATACAAATGACTACTGTTCAATTCCTCAACAACTCAAAGATCAGCTGAGTGAAAGGTACCCTGGAGCAAGGCGAGCATACTTAAAAACTGGAGGTGATTTCCCATTTCTTTCACGTTCAGATGAAGTAAACCTACATCTTCAGTTACACCTGAGACGAGTTGGGGTGGAAGCCCGTCCAGATTTGGTCAAGGGTATCTCAAAGGATGGTAGTGGTGGGAGTTCTAGTGAAAAGAATGATGAAAGAGAAGATTCAGATGTTCCTCCTAAGGACAATGGGGGAAGTCCTGAAAGCCCTTCCACTGAAACCCAATTGCCAGAGGCTCCAGAAAGTTCGGGTTCTCATAGCTTAGATGACCAGCTCCTCAGCAATGCAAAGGTTTGCTTCACCAGTCCTGAACATGTGAGGCTTCCCATATCTCATGCATTTTTTGAGAAACAGCAAGACATTGTATCCACAAGATCAAGTTTTGAGCGTCTGCGCCCAAAAGCAACACTTCATCAATCGTGCTTTCCACCTCCACCCACCATTAACTATTGA 1194 44.97 MKGVFSAPGDYIHFKSQVPLHKIPIGTKQWRYYDFGPKVVPPLICLPGTAGTADVYYKQIMSLSIKGYRVISVDIPRVWNHHEWIQAFEKFLDAIDVHHIHLYGTSLGGFLAQLFAQHRPRRVRSLILSNSFLETRSFSSAMPWAPIVSWTPSFLLKRYVLTGIPDGPHEPFIADSVDFVVSQVETLSREDLASRLTLTVDAASIGPLLLSDSFITLMDTNDYCSIPQQLKDQLSERYPGARRAYLKTGGDFPFLSRSDEVNLHLQLHLRRVGVEARPDLVKGISKDGSGGSSSEKNDEREDSDVPPKDNGGSPESPSTETQLPEAPESSGSHSLDDQLLSNAKVCFTSPEHVRLPISHAFFEKQQDIVSTRSSFERLRPKATLHQSCFPPPPTINY* 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4768238 4782009 - Vvi2g487 Vvi2g487 783186

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g487 397 Pfam alpha/beta hydrolase fold 41 136 IPR000073 -
Vvi2g487 397 MobiDBLite consensus disorder prediction 312 336 - -
Vvi2g487 397 MobiDBLite consensus disorder prediction 280 336 - -
Vvi2g487 397 SUPERFAMILY alpha/beta-Hydrolases 18 265 IPR029058 -
Vvi2g487 397 Gene3D alpha/beta hydrolase 11 271 IPR029058 -
Vvi2g487 397 PANTHER ACID CLUSTER PROTEIN 33 2 341 IPR026151 -
Vvi2g487 397 MobiDBLite consensus disorder prediction 292 308 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g487 K19367 SPG21; maspardin - vvi:100249980 740.725
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g487 . . . . . . . . . . . Cma15g01162 . Car15g01050 . . . . . . . . . . . . . . . . . . . . . . Csa05g00378 Chy09g01134 . . . . . Bpe08g01448 . . . . . Cmo15g01223 . . . . . Cpe13g00211 Bhi12g00377 . . Lac11g2222 Hepe06g1638 . Lcy12g1761 Cla01g00351 Cam01g0367 Cec01g0363 Cco01g0377 Clacu01g0370 Cmu01g0350 Cre09g2160 Lsi09g00378 . . Cme09g01665
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007275 0 1 0 0 1 1 2 1 1 1 1 1 2 1 1 4 1 2 2 1 1 1 1 1 3 1 1 1 1 1 36