Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g494 ATGGCATTATCGAGTGTTTCCCCACTTTATATCTCAAAGTCTCCAAATCATCTACGATCTCTGTCCAAACCCTTCACCGTCGTCTGTAGGATTGAGCGCCAAAGGGAAAATAATTGGCGCGGGGAAGCGAATGCAGAGTCGAAGAAGTGGCAAAGACTGGTTTCAACCGCACTGGCTGCCGCAGTGGTTACCCTCAGCCCGGTGATGCCTGCTGTTGCGGATCTCAATAAGTATGAAGTCGAGACTCGGGGTGAATTTGGGATTGGATCAGCAGCCCAATTTGGTTCTGCAGATCTCAGGAAAGCAGTTCATGTGAATGAAAATTTCAGAAGAGCCAATTTCACATCTGCCGACATGAGGGAGTCTGATTTCAGTGGTTCAACATTTAATGGTGAATACCTTGAGAAAGCTGTTGCATACAAGGCGAGTTTAACAGACGCTCAGTCTTCCATCAATCCAACAGCTAGGCAATACAAATCCCAGGATGGGGAGGTTCTTCTTATTCTTCTTCTCCTTGCTGAATTGGAACTCAAGCTTCTTCCAGAGGATTTGAGCCCTCCAATCTCCTTTTCAAGGGCCGGATGCACCCCATGCCAGACCATATAA 606 47.19 MALSSVSPLYISKSPNHLRSLSKPFTVVCRIERQRENNWRGEANAESKKWQRLVSTALAAAVVTLSPVMPAVADLNKYEVETRGEFGIGSAAQFGSADLRKAVHVNENFRRANFTSADMRESDFSGSTFNGEYLEKAVAYKASLTDAQSSINPTARQYKSQDGEVLLILLLLAELELKLLPEDLSPPISFSRAGCTPCQTI* 202
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4851662 4855934 - Vvi2g494 Vvi2g494 783193

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g494 201 PANTHER THYLAKOID LUMENAL PROTEIN TL20.3, CHLOROPLASTIC 11 150 - -
Vvi2g494 201 Gene3D - 79 158 - -
Vvi2g494 201 SUPERFAMILY Pentapeptide repeat-like 92 148 - -
Vvi2g494 201 Pfam Pentapeptide repeats (8 copies) 92 131 IPR001646 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g494 - - - vvi:104882043 278.87
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g494 . . . . . . . . . . . Cma15g01150 . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00394 Chy09g01119 . . . . . . Bpe11g00258 . . . . Cmo15g01210 . . . . . Cpe13g00218 Bhi12g00404 . . . . . . Cla01g00366 Cam01g0387 Cec01g0380 Cco01g0398 Clacu01g0386 Cmu01g0367 Cre09g2143 Lsi09g00396 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006392 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 2 1 2 2 2 38