Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g496 ATGGCTTCTTCGGGTTTTCTCGGACTGTCGCTTATCCACATTGCCTTACTTTTGAGCTTCTGTTTTGCTGAAGATCCCTTCGTTCACTTTGATTTTGAGGTCTCCTACATCACTGCTTCTCCTCTGGGTGTTCCCCAGCAGGTTATTGCTATAAATGGAAAGTTCCCCGGTCCTGTAGTTAATGCCACTACTAACAACAATGTCGTAGTTAATGTACGGAACAAATTGGATGAGAATCTCCTCATTACCTGGTCAGGGATTCAACAGCGGCGTAGCTCATGGCAAGATGGTGTTCCGGGCACAAACTGTCCGATTCCACCAAAATGGAATTGGACCTACCAGTTTCAGGTCAAGGATCAGATTGGGAGCTTCTTTTACTTCCCGTCTCTCAATTTTCAGAGAGCAGCAGGCGGGTATGGCGGTTTTATTATAAACAACCGAGCTATAATTCCGATTCCTTTCGCCACCCCAGATGGGGATATCACCATTATGATTGGTGATTGGTACACCAAGAATCACACGGATCTGAGGAAGACCCTTAACGGAGGAAAAGAACTTGGTATGCCAAATGGGGTTCTCATTAATGGGAAAGGCCCTTATAGATATAACACTACGCTTGTCCCTGAGGGCATTGACTATGAAACAATTGATGTCCAGCCAGGCAAGACTTATCGTATTCGTGTACACAATGTTGGAGTATCAACTAGTTTGAATTTCAGGATCCAGAATCATAATCTGCTTTTAGCAGAGACAGAGGGATCATACACAGTGCAACAGAATTATACTAGCTTAGATATTCATGTTGGGCAATCTTATTCATTTTTGGTAACCATGGATCAGAATGCAAGTACTGATTACTACATTGTAGCTAGCGCTAGGTTTGTGAATGAGTCACTTTGGAAACGGGTTACTGGTGTTGCCATTTTGCGTTATTCAAATTCCAAAGGAAAGGCATCTGGTCCCCTTCCAGACCCACCAAACGATGAATTCGACAAAACATTCTCAATGAACCAAGCTAGATCCATCAGGTGGAATGTATCTGCTAGTGGTGCTCGTCCTAACCCACAGGGATCTTTTAGGTATGGCTCAATCAATGTGACTGATGTTTATGTGTTGAAAAACAAGCCACCTGTGACGATCGATGGGAAAATGAGGACAACACTCAGTGGGATATCATTTGTCAATCCCACCACGCCCATTAGGCTTGCAGATCAGTTCAAGGTGAAGGGAGTATATAAGCTTGATTTCCCCAAAACCCCACTTACTGGATCACCTCGGATGGAAACATCTGTAATTAATGGTACATATAGGGGATTTATGGAAGTAATACTACAGAACAATGACACCAAGATGCAGAGCTATCACATGAATGGATATGCATTTTTCGTTGTTGGGATGGATTATGGTGAGTGGACTGAGAATAGCAGGGGCACGTATAATAAATGGGATGGAATTGCCCGCTCCACTACACAGGTTTTCCCTGGTGCATGGACGGCAATCTTAATCTCTCTTGACAATGTTGGAGTTTGGAACCTGAGAGCAGAAAATCTTGACTCATGGCATCTTGGCCAAGAAACATATGTCAGGGTTGTCAATCCAGAGGCTACAAACAAGACTGAGTTGCCCATGCCAGATAATGCCCTTTTTTGCGGTGCCCTGAGCAAAATGCAGAAGCCACAAGACATCACTTCTTCAACCACATCAATCAGTGGCAGTAAATTAAGTATTTTCTTCACTCTGTTGATGATCTATGCTGCAATCTCCACTTTCCACTAA 1776 43.52 MASSGFLGLSLIHIALLLSFCFAEDPFVHFDFEVSYITASPLGVPQQVIAINGKFPGPVVNATTNNNVVVNVRNKLDENLLITWSGIQQRRSSWQDGVPGTNCPIPPKWNWTYQFQVKDQIGSFFYFPSLNFQRAAGGYGGFIINNRAIIPIPFATPDGDITIMIGDWYTKNHTDLRKTLNGGKELGMPNGVLINGKGPYRYNTTLVPEGIDYETIDVQPGKTYRIRVHNVGVSTSLNFRIQNHNLLLAETEGSYTVQQNYTSLDIHVGQSYSFLVTMDQNASTDYYIVASARFVNESLWKRVTGVAILRYSNSKGKASGPLPDPPNDEFDKTFSMNQARSIRWNVSASGARPNPQGSFRYGSINVTDVYVLKNKPPVTIDGKMRTTLSGISFVNPTTPIRLADQFKVKGVYKLDFPKTPLTGSPRMETSVINGTYRGFMEVILQNNDTKMQSYHMNGYAFFVVGMDYGEWTENSRGTYNKWDGIARSTTQVFPGAWTAILISLDNVGVWNLRAENLDSWHLGQETYVRVVNPEATNKTELPMPDNALFCGALSKMQKPQDITSSTTSISGSKLSIFFTLLMIYAAISTFH* 592
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4870556 4875422 - Vvi2g496 Vvi2g496 783195

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g496 591 Pfam Multicopper oxidase 160 313 IPR001117 -
Vvi2g496 591 Gene3D - 22 146 IPR008972 -
Vvi2g496 591 Pfam Multicopper oxidase 400 533 IPR011706 GO:0005507|GO:0016491
Vvi2g496 591 PANTHER MONOCOPPER OXIDASE-LIKE PROTEIN SKS1 11 562 - -
Vvi2g496 591 SUPERFAMILY Cupredoxins 154 353 IPR008972 -
Vvi2g496 591 PANTHER MULTI-COPPER OXIDASE 11 562 IPR045087 -
Vvi2g496 591 Gene3D - 158 351 IPR008972 -
Vvi2g496 591 SUPERFAMILY Cupredoxins 22 174 IPR008972 -
Vvi2g496 591 SUPERFAMILY Cupredoxins 379 551 IPR008972 -
Vvi2g496 591 Pfam Multicopper oxidase 34 147 IPR011707 GO:0005507
Vvi2g496 591 Gene3D - 363 562 IPR008972 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g496 - - - vvi:100262548 1186.02
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi2g496 Vvi16g429 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g496 . . . . . . Bma07g01605 . . . . Cma15g01148 . Car15g01043 . . . . . . . . . . . . . . . . . . . . . . Csa05g00396 Chy09g01117 . . Blo19g00222 . Bda09g00089 Bpe08g01440 . . . . . Cmo15g01208 . . . . . Cpe13g00220 . . . . . . . Cla01g00369 Cam01g0389 Cec01g0382 Cco01g0400 Clacu01g0388 Cmu01g0369 Cre09g2141 Lsi09g00399 . . Cme09g01647
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000359 4 3 4 4 4 4 5 4 4 4 5 4 5 4 4 5 4 6 5 4 4 4 4 4 4 5 4 8 5 2 130