Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g498 ATGTCGCTTTTATTGCAATCTCCTCCCTCATCAGCCCTCTCCTCTTCTTCACGTCAGGATGGGAGACTAAGGTTCTTAGCTCGATCCGCTGCGCCCAGATTTGCTCTCAGCTTCCAGAGGTCGTTTCCTCAAATTCGCGCCTCCGCCAACTTTTCTTCCTCCCTTGACAAAGGTTTAAGCACTGAATTTGATGCCGTTTCAGACTTAAGTGAGATCGTTCCAGACACCGTCATTTTCGATGATTTCGAGAGATTTCCACCAACAGCTGCTACTGTTAGCTCCTCACTTCTCTTAGGCATTTGCAGCCTGCCCGATACAATTTTTAGGAGCGCTGTGGAGACTGCATTGGCGGATTCAGTGTGTTATGGGTTGGAAAGCCCCGATGCTCGAATGTCCTGCTTCTTTAATAAGGCTTTGGTGAAAGTTGGCAGTGACCTTGTGAAACTAGTTCCTGGTAGAGTGTCAACTGAAGTGGATGCTCGTCTTGCTTATGACACACATGGCATTATTAGGAAGGTGCATGACCTTTTGACCCTGTACAATGAAATTGATGTCCCTCTAGAGCGTTTGTTATTTAAAATTCCTTCAACTTGGCAAGGAATAGAGGCCTCAAGGTTGCTGGAATCTGAGGGCATACAGACACATTTGACTTTTGTTTACAGTTTTTGTCAAGCTGCAGCTGCTGCTCAAGCTGGTGCTTCTGTTATTCAGATTTTTGTTGGTCGCGTTCGGGATTGGGCCCGCAATCATTCTGGTGACCCTGAGATAGAAGCTGCTCTTAAAAGAGGGGAAGATCCTGGTTTGGCTTTGGTGACCAAGGCTTATAACTACATTCACAAACATGGATACAAATCAAAGTTGATGGCAGCAGCGGTTCGGAACAAGCAGGATTTGTTCAGTCTTCTGGGGGTTGACTATATCATTGCACCATTGAAGGTACTGGAATCTCTCAAAGAATCTATAACTTCCCCAGATGAAAAGTACTCTTTTGTAAGGAGGCTATCCCCAAATTCTGCTGCCTCTTACAGTTTCAGTGAAGAAGAGCTTGTGAAGTGGGACCAGTTGAACTTTGCATCATCCATGGGCCCTGCAGCTGTGGAGCTTCTGGCTGCCGGACTTGAAGGGTATGCTACACAAGCCAAGCGAGTGGAGGAGTTATTTGGGAAGATCTGGCCACCCCCTAATGTTTGA 1191 46.52 MSLLLQSPPSSALSSSSRQDGRLRFLARSAAPRFALSFQRSFPQIRASANFSSSLDKGLSTEFDAVSDLSEIVPDTVIFDDFERFPPTAATVSSSLLLGICSLPDTIFRSAVETALADSVCYGLESPDARMSCFFNKALVKVGSDLVKLVPGRVSTEVDARLAYDTHGIIRKVHDLLTLYNEIDVPLERLLFKIPSTWQGIEASRLLESEGIQTHLTFVYSFCQAAAAAQAGASVIQIFVGRVRDWARNHSGDPEIEAALKRGEDPGLALVTKAYNYIHKHGYKSKLMAAAVRNKQDLFSLLGVDYIIAPLKVLESLKESITSPDEKYSFVRRLSPNSAASYSFSEEELVKWDQLNFASSMGPAAVELLAAGLEGYATQAKRVEELFGKIWPPPNV* 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4887317 4897426 - Vvi2g498 Vvi2g498 783197

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g498 396 CDD Transaldolase_TalAB 61 387 IPR004730 GO:0004801|GO:0005737|GO:0006098
Vvi2g498 396 Pfam Transaldolase/Fructose-6-phosphate aldolase 75 384 IPR001585 GO:0005975
Vvi2g498 396 PANTHER TRANSALDOLASE 1 396 IPR001585 GO:0005975
Vvi2g498 396 PANTHER ALDOLASE SUPERFAMILY PROTEIN 1 396 - -
Vvi2g498 396 Gene3D Aldolase class I 61 390 IPR013785 -
Vvi2g498 396 SUPERFAMILY Aldolase 61 391 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g498 K00616 E2.2.1.2, talA, talB; transaldolase [EC:2.2.1.2] - vvi:100257422 744.191
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g498 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00398 Chy09g01115 . . Blo19g00230 . Bda09g00091 Bpe08g01438 . . . . . . . . . . . . Bhi12g00411 . . . . . Lcy12g1800 Cla01g00372 Cam01g0391 Cec01g0383 Cco01g0403 Clacu01g0391 Cmu01g0372 Cre09g2139 Lsi09g00401 . . Cme09g01645
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012684 1 1 1 1 1 0 1 1 0 1 0 0 1 1 1 1 0 2 1 0 1 1 1 1 1 1 1 2 2 1 27