Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g5 ATGGCTAGGGTACCCGCATTGACCACAAGCATTCAGTATACTCAGCACTACCTCTTGGAAAAGCTTGTTGTTAAAGGTGTAGTAGTGCTGATGGGGTTTTGTTCTCTCTCAACCTTGGCCATGGCTGATAGGCATGGTGAGGATTCTCCATACTTTGCTGGTTGGAAAGCCTATGATCTCAACCCATATGACCTACTCTACAACCCATCTGGGATTATTCAAATGGGTCTTGCTGAGAATCAGGTTGGGACTGACCTATTAGAAGAGTGGCTGGAGAAGCATTCTGATATCCCTACATGGAAGGGCACTCTCACAAGCTTCAAGCAAACTGCACTGTATCAGGATTACCATGGCCTAGCTAATTTTAGAAAGGCACTAGCTAACTTCATGGCAGAAGTGAGGGGAAGGAGAGTGAAGATTGATCCAGATATGATTGTTTTAACAGCCGGTGCCACCGCCGGCAATGAAATACTCACATTTTGCATTGCTGACCCCGGAGAGGCCTTGCTTGTCCCAACCCCATACTATCCAGGGTTTGATAGGGATTTGAGGTGGAGAACTGGGGTGGATATAATACCAGTGAAGTGCTATAGCTACAACAACTTTGAAGTCACACTCCCAGCCTTAGAAAAAGCCTACCAAGAAGGGTTAAGCAAGAAGCAGTCCATAAAAGCTATTCTCATAACCAACCCATCAAACCCTCTAGGCCTCACCATTTCCCCTCAAACCCTCACCATGATACTCGACTTCGCTGCTGAAAAATCTATCCATGTCATTTCTGATGAAGTTTACGCTGGAACTGTGTTTTCTTCTCAGCCCTTCACTAGCATACTTGAAATTGTCCAGAGCTCAAACAAGTATGACCCGGAAACAGTCCATGTCGTTTATAGCCTCTCCAAGGATCTTGGCCTCCCGGGCTTCCGAATTGGCGCTATCTACTCCTCAAACCCCAGAATTATCACTGCATCAAGGAGAATGTCAAGCTTCTCTCTCATATCCTCCCAAACCCAGGTGCTGCTAAAGTGCCTTCTTTCCGACTCTGGATTTATCGCAGAGTATCTTGCTACAATTAAGGAGAGACTGAAAAGGCGACACGGGGAATTCAAGAGGGGGTTGAAAGAGATAGGAATCGATTCCTTGGAAGGTAATGCAGGTCTATTCAGCTGGGTTAACTTGAGGAATTTATTGGTTTGTGATAATTGGGATGGAGAAATGAAGCTATGGAGAGTAATTCTTGAAGAAATCGGCTTGAACGTGAGCCCAGGATGCTCATTCCACTGCGAAGAACCGGGATGGTTTAGGGTTTGTTATGGGAATATGAGCGAAGATGAGATGAATGTTGCTCTAGGCAGGATAAAGGCATTCATGTCGGCTGGTCGAGCACAAGAAATAGCAGTACTATCCATGGGGAAAACTGATGCATTGGCGGCAGCGGAGGGGTCCAGTGGGGTTGCGGCCGCAGCCTGCACATCACTTGGGTTGGATGCAGGTGATCTACAACCAGAGCCACTTGCTCACTGA 1521 46.75 MARVPALTTSIQYTQHYLLEKLVVKGVVVLMGFCSLSTLAMADRHGEDSPYFAGWKAYDLNPYDLLYNPSGIIQMGLAENQVGTDLLEEWLEKHSDIPTWKGTLTSFKQTALYQDYHGLANFRKALANFMAEVRGRRVKIDPDMIVLTAGATAGNEILTFCIADPGEALLVPTPYYPGFDRDLRWRTGVDIIPVKCYSYNNFEVTLPALEKAYQEGLSKKQSIKAILITNPSNPLGLTISPQTLTMILDFAAEKSIHVISDEVYAGTVFSSQPFTSILEIVQSSNKYDPETVHVVYSLSKDLGLPGFRIGAIYSSNPRIITASRRMSSFSLISSQTQVLLKCLLSDSGFIAEYLATIKERLKRRHGEFKRGLKEIGIDSLEGNAGLFSWVNLRNLLVCDNWDGEMKLWRVILEEIGLNVSPGCSFHCEEPGWFRVCYGNMSEDEMNVALGRIKAFMSAGRAQEIAVLSMGKTDALAAAEGSSGVAAAACTSLGLDAGDLQPEPLAH* 507
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 117103 118883 - Vvi2g5 Vvi2g5 782704

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g5 506 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 297 310 IPR004838 GO:0003824|GO:0009058|GO:0030170
Vvi2g5 506 Gene3D Aspartate Aminotransferase, domain 1 61 451 IPR015422 GO:0003824
Vvi2g5 506 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 75 101 - -
Vvi2g5 506 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 107 123 - -
Vvi2g5 506 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 144 164 - -
Vvi2g5 506 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 166 187 - -
Vvi2g5 506 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 220 244 - -
Vvi2g5 506 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 256 279 - -
Vvi2g5 506 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 291 315 - -
Vvi2g5 506 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 323 346 - -
Vvi2g5 506 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 34 459 - -
Vvi2g5 506 Gene3D - 95 346 IPR015421 GO:0003824
Vvi2g5 506 CDD AAT_like 113 454 - -
Vvi2g5 506 Pfam Aminotransferase class I and II 73 452 IPR004839 GO:0009058|GO:0030170
Vvi2g5 506 PANTHER 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 7 34 459 - -
Vvi2g5 506 SUPERFAMILY PLP-dependent transferases 41 456 IPR015424 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g5 K01762 ACS; 1-aminocyclopropane-1-carboxylate synthase [EC:4.4.1.14] - vvi:100251690 926.006
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi2g5 Vvi15g849 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g5 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004282 2 1 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 1 1 1 2 1 2 1 1 1 2 2 1 2 43