Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g504 ATGTCATCATGTAACGTAGCCGTTATTGGAGCTGGCCCAGCGGGCTTAGTTGCAGCCCGGGAACTCCGTCGGGAAGGCCACAAGGCCGTTGTGTTCGAGCGCCAAGCTCAAGTGGGTGGCACCTGGGTGTACCAACCCAGCGTGGAGGCAGACCCACTCGCGTCCGACCCATCTCGACCCATCGTCCACTCCAGCCTCTACCCGTCTCTCCGCACCAACCTCCCCAGAGAAGTCATGGGGTTTCGAGACTACCCCTTCCTGTCCACGGGTTTAGCCCATAGGGACTCGAGAAGGTTCCCGGGTCATCGAGAGGTTTTGCATTTTATCAATGATTTTACCACCGAGTTTGGACTCATTGATTTGATCCGCTTCGAGACGGAGGTCGTTTATACAGGGCTGGGTGCGGATGGGAAGTGGAGGTTGAGATCCAGAGGGGCAAATGATGAGGAAGTCGACGAGATTTTTGATGCTGTGGTTGTCTGCAATGGGCATCACACTGAGCCCCGTATCGCCGAAATTCACGGCATTGATGCATGGCCGGGGAAGCAAATTCATAGCCACAATTATCGTATTCCTGAGCCCTTCCGAGATCAAGTTGTAATTTTGATAGGGAATGCTTTTAGTGCCGATGATATCTCTAGGGACATTGCTCAAGTTGCCAAAGAAGTTCATGTTGCGACTAGATCAGAAGAGAACAGTATGTTGGGAAAGCGGCCTGGCTATGATAATATGTGGCTTCATTCTACGGTCGAAAGTGTCCACAGAGATGGTACAGTGATATTTCAGGATGGAAGCGGGGTTCTTGCTGATGTGATTATGCACTGCACAGGGTACAAGTATTATTTCCCTTTTCTTGATACCAATGGCATCGTAACCGTGGATGATAATCGTGTGGGGCCATTATACAAGCACGTTTTTCCACCAGCTTTGGCTCCAGGGCTTTCCTTTGTTGGGTTACCATGGATGGCTCCCCTTTTCGCAGTGCTTGAATTGCAAAGCCAATGGATAGCAGGCGTTCTATCTGGTCGGATTGGACTCCCATCACAGGAGGAGATGATGAAGGATGTGGAAGCCTTTTACTTGTCGCTCGAAGCTTCTGGCACGCCTAAGCGATATACTCATAAAATTGGTGATTATGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCAGAGGCATATCGTGATGAATGGGACGATGAGGACTTGGTGTTGGAAGCTCAGAAGGACTTTCTTAAGTAAGTAA 1317 46.24 MSSCNVAVIGAGPAGLVAARELRREGHKAVVFERQAQVGGTWVYQPSVEADPLASDPSRPIVHSSLYPSLRTNLPREVMGFRDYPFLSTGLAHRDSRRFPGHREVLHFINDFTTEFGLIDLIRFETEVVYTGLGADGKWRLRSRGANDEEVDEIFDAVVVCNGHHTEPRIAEIHGIDAWPGKQIHSHNYRIPEPFRDQVVILIGNAFSADDISRDIAQVAKEVHVATRSEENSMLGKRPGYDNMWLHSTVESVHRDGTVIFQDGSGVLADVIMHCTGYKYYFPFLDTNGIVTVDDNRVGPLYKHVFPPALAPGLSFVGLPWMAPLFAVLELQSQWIAGVLSGRIGLPSQEEMMKDVEAFYLSLEASGTPKRYTHKIGDYEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQRHIVMNGTMRTWCWKLRRTFLSK* 439
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4951820 4956004 - Vvi2g504 Vvi2g504 783203

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g504 438 SUPERFAMILY FAD/NAD(P)-binding domain 244 374 IPR036188 -
Vvi2g504 438 Pfam Flavin-binding monooxygenase-like 5 230 IPR020946 GO:0004499|GO:0050660|GO:0050661
Vvi2g504 438 Pfam Flavin-binding monooxygenase-like 248 358 IPR020946 GO:0004499|GO:0050660|GO:0050661
Vvi2g504 438 Gene3D - 172 275 IPR036188 -
Vvi2g504 438 PANTHER DIMETHYLANILINE MONOOXYGENASE 3 379 - -
Vvi2g504 438 SUPERFAMILY FAD/NAD(P)-binding domain 2 232 IPR036188 -
Vvi2g504 438 Coils Coil 415 416 - -
Vvi2g504 438 Coils Coil 379 380 - -
Vvi2g504 438 Gene3D - 6 379 IPR036188 -
Vvi2g504 438 PRINTS Flavin-containing monooxygenase (FMO) signature 4 20 IPR000960 GO:0050660|GO:0050661
Vvi2g504 438 PRINTS Flavin-containing monooxygenase (FMO) signature 28 52 IPR000960 GO:0050660|GO:0050661
Vvi2g504 438 PRINTS Flavin-containing monooxygenase (FMO) signature 184 198 IPR000960 GO:0050660|GO:0050661
Vvi2g504 438 PRINTS Flavin-containing monooxygenase (FMO) signature 211 226 IPR000960 GO:0050660|GO:0050661
Vvi2g504 438 PRINTS Flavin-containing monooxygenase (FMO) signature 262 289 IPR000960 GO:0050660|GO:0050661
Vvi2g504 438 PRINTS Flavin-containing monooxygenase (FMO) signature 327 340 IPR000960 GO:0050660|GO:0050661
Vvi2g504 438 PANTHER FLAVIN-CONTAINING MONOOXYGENASE 3 379 - -
Vvi2g504 438 PIRSF FMO 2 240 IPR000960 GO:0050660|GO:0050661
Vvi2g504 438 PIRSF FMO 232 379 IPR000960 GO:0050660|GO:0050661
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g504 - - - vvi:100852547 779.245
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g504 . . . . . . . . Cmo06g00787 . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi07g01326 . . Cme06g02610 . . . . . . . . . . . Cma06g00767 . . Car16g01008 . . . . . . . . . . . . . . . . . . Chy06g02021 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002306 0 0 1 1 1 3 2 1 2 4 1 1 2 4 4 2 1 1 2 2 1 2 1 4 2 2 1 4 1 5 58