Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g505 ATGTCGCCCACAATCTCCAAAATCAAATCACTCAACGTAGCGATCATCGGCGCCGGCGCCGCTGGTTTAGTTTCTGCCAGGGAGCTTCGCCGAGAAGGGCACCAGGTCGTGGTGTTCGAGCGGCAAGCCCAATTGGGTGGCACATGGGTATACAACCCCGGCGTGGAGGCAGACCCACTTGGGTCAGACCCATCTCGAGCCATAGTTCACTCCAGCCTCTACGCCTCCCTCCGCACCAATCTCCCCAGAGAAGCCATGGGGTTTCGAGCCTACCCTTTCGTATCCACTGGTCAACCCCATAGGGACTCCAGAAGGTTCCCAGGTCATCAAGAGGTCTTGCTTTATCTCAATGATTATGCTACTGAGTTTGGACTCACCGAGTTAGTCCGCTTCGAGACAGAAGTGGTTTATGCTGGGTTGTTTGAGGACGGGAAGTGGAAGGTGAGGTCTAGACAGGAAAATGGCGTGGCAGTTGATGTGGATGAGATTTTTGATGCTTTGGTTGTTTGCAATGGCCATTACACCGAGCCCCGTACCGCAGAAATTCCAGGAATTGATGCATGGCCAGGGAAGCAAATGCATAGCCACAATTATCGTATTCCTGAGCCCTATCGAGATCTTGTTGTAATTTTAATAGGGAGTGGTCCAAGTGCTCTGGATATCTCTATAGACATTGCTCAGGTTGCTAAAGAAGTTCATGTTGCATCTAGATCAGACGAGGCTGAAGTCTTGAGAAAGCAGTTTGGCTATCATCATATTCAGCTGCATCCTATGATAGAAAGCGTCCAGAAAGATGGTACCGTGATATTTTATGATGGGAGTATGGTTCTTGCTGATGTGATTCTGCACTGCACGGGATACAAGTATCATCTACCTTTTCTTGACACTCATGGCATTGTGACTGTGGACGACAATTGTGTGGGACCATTATACAAACACATTTTCCCACCAGTTCTCGCACCGAGGCTTTCCTTTGTTGGGTTACCATGGATGGTTCTCCCTTTCCCCATGTTTGAATTCCAAAGCAAATGGATAGCCGGTGTTCTCTCCGATCGGATTAGACTCCCATCGCAGGAGGAGATGATGGAAAATGTTTCAGCCTTTTATTTGTCACTAGAAGCTTCTGGCATGCCTAAGCGCCACACTCATAAAATGGGTGCCCATCTGTTCGAGTACAATGGCTGGCTTGCTGCTGAGTGTGGGGTTCCAGTGACTGAAGAGTGGAGAAAGAAAATGCTTTATGCAACCTTTCAGAACTATTTAGCCCACCCAGGGACATACCGTGATGCGTGGGAAGATGATGACTTGGTATTGGAAGCCCTTATGGAGATGGCCACAGTTGCAACTCTTGATTAA 1356 48.67 MSPTISKIKSLNVAIIGAGAAGLVSARELRREGHQVVVFERQAQLGGTWVYNPGVEADPLGSDPSRAIVHSSLYASLRTNLPREAMGFRAYPFVSTGQPHRDSRRFPGHQEVLLYLNDYATEFGLTELVRFETEVVYAGLFEDGKWKVRSRQENGVAVDVDEIFDALVVCNGHYTEPRTAEIPGIDAWPGKQMHSHNYRIPEPYRDLVVILIGSGPSALDISIDIAQVAKEVHVASRSDEAEVLRKQFGYHHIQLHPMIESVQKDGTVIFYDGSMVLADVILHCTGYKYHLPFLDTHGIVTVDDNCVGPLYKHIFPPVLAPRLSFVGLPWMVLPFPMFEFQSKWIAGVLSDRIRLPSQEEMMENVSAFYLSLEASGMPKRHTHKMGAHLFEYNGWLAAECGVPVTEEWRKKMLYATFQNYLAHPGTYRDAWEDDDLVLEALMEMATVATLD* 452
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4957740 4960852 - Vvi2g505 Vvi2g505 783204

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g505 451 SUPERFAMILY FAD/NAD(P)-binding domain 10 240 IPR036188 -
Vvi2g505 451 SUPERFAMILY FAD/NAD(P)-binding domain 246 434 IPR036188 -
Vvi2g505 451 PANTHER DIMETHYLANILINE MONOOXYGENASE 8 443 - -
Vvi2g505 451 Gene3D - 13 429 IPR036188 -
Vvi2g505 451 PRINTS Flavin-containing monooxygenase (FMO) signature 11 27 IPR000960 GO:0050660|GO:0050661
Vvi2g505 451 PRINTS Flavin-containing monooxygenase (FMO) signature 35 59 IPR000960 GO:0050660|GO:0050661
Vvi2g505 451 PRINTS Flavin-containing monooxygenase (FMO) signature 193 207 IPR000960 GO:0050660|GO:0050661
Vvi2g505 451 PRINTS Flavin-containing monooxygenase (FMO) signature 220 235 IPR000960 GO:0050660|GO:0050661
Vvi2g505 451 PRINTS Flavin-containing monooxygenase (FMO) signature 271 298 IPR000960 GO:0050660|GO:0050661
Vvi2g505 451 PRINTS Flavin-containing monooxygenase (FMO) signature 336 349 IPR000960 GO:0050660|GO:0050661
Vvi2g505 451 PANTHER FLAVIN-CONTAINING MONOOXYGENASE 8 443 - -
Vvi2g505 451 Gene3D - 181 284 IPR036188 -
Vvi2g505 451 Pfam Flavin-binding monooxygenase-like 253 367 IPR020946 GO:0004499|GO:0050660|GO:0050661
Vvi2g505 451 Pfam Flavin-binding monooxygenase-like 12 239 IPR020946 GO:0004499|GO:0050660|GO:0050661
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g505 - - - vvi:100852585 914.835
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g505 . . . . . Bpe07g00163 . . . Cmo16g01109 . . . . . Cpe14g00878 . . . . . . . . . . . . . . . . . . . . . . Cme06g02609 . . . . . . . Bma12g00154 . . . . Cma16g01059 Car06g00685 . . . . . . . . . . . . . . . . . . . Chy06g02022 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002306 0 0 1 1 1 3 2 1 2 4 1 1 2 4 4 2 1 1 2 2 1 2 1 4 2 2 1 4 1 5 58