Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g507 ATGGCGCCCTCCATCTCCCTGTTCAAATCACGTGACGTTGCCGTCATCGGGGCTGGCGCTGCCGGTTTAGTCGCCGCCCGTGAGCTCCGCCGTGAAGGCCACAAGGTCGTTGTCTTCGAGCGGGAACGCCAAGTGGGTGGGACCTGGGTCTACACGCCCACAGTGGAGACGGATCCACTTGGCTCCGACCCGTCTCGACACATAGTCCACTCCAGCCTCTACGCCTCCCTCCGCACCAACCTCCCTAGAGAGGTCATGGGTTTTCTGGACTACCCCTTCGTATCCACTGGTGAACCACATAGGGACCCCAGAAGGTTTCCGGGTCACCGAGAGGTCTCGCTTTATCTCAAGGATTTTGCGGTTGGGTTTGGACTCAATGAATTAATCCGCTTCGAGACGGAGGTAGTTTATGCTGGTTTGGTCGAGGATGAGAAGTGGAGGGTGAAGTCTAGAAGCGGAAACGATGCGGCAATTGATGTGGAGGAGATTTTTGATGCTGTGGTTGTTTGCAATGGCCATTACACAGAGCCCCGTCTTGCAGAAATTCCTGGCATTGATGCATGGCCAGGAAAGCATATGCATAGTCACAATTATCGTATTCCTGAGCCCTTTCGAGATCAGGTTGTAGTTTTGATAGGGGGTGCTGCAAGTGCTGTCGACATCTCTATGGACATTGCTCAAGTTGCTAAAGCAGTTCATATTGCATCTAGATCAGTTGAGGCTGGAATCTTGAAAAAGTTATCTGGCAATGCCATTGATAACATGTGGCTTCATCCTATGATAGAAAGTGTCCAGAAAGATGGTACTGTGATATTTTATGATGGGAGTGTGGTTCTTGCTGATGTAATTCTGCACTGCACGGGATACAAGTATCATTTCCCTTTTCTTGACACCAGTGGAATTGTGACTGTGGATGACAATCGTGTGGGACCTCTATACAAGCATATTTTTCCACCACATTTGGCTCCAGGGCTTTCCTTTGTTGGTTTGCCATGGAAGGTCCTCCCTTTCCCCATGTTTGAATTCCAAAGCAAATGGATAGCAGGTGCTCTCTCAGGTCGGATTGGACTCCCATCGCAGGAGGAGATGATGGCAGATGTTTCAGCCTTTTATTTGTCACTAGAAGCTTCTGACACACCAAAGCACTACACTCACAACTTGGCTGATTCTCAGTTTGAGTATGATGATTGGCTTGCCTTGGAATGCGGGATTCCAGGCGTTGAAGAATGGAGAAAGAAAATGTATGAAGCAACTGCCAAGAACAAGAAGGTCCGACCAGACAAATACCGCGACAAATGGGAAGATGAAGACTTAATGTTGGAAGCTCAGAAGGACTTCGCTGGATGCCGCCTGAATGGGGCTGGTGACAATTGA 1374 49.34 MAPSISLFKSRDVAVIGAGAAGLVAARELRREGHKVVVFERERQVGGTWVYTPTVETDPLGSDPSRHIVHSSLYASLRTNLPREVMGFLDYPFVSTGEPHRDPRRFPGHREVSLYLKDFAVGFGLNELIRFETEVVYAGLVEDEKWRVKSRSGNDAAIDVEEIFDAVVVCNGHYTEPRLAEIPGIDAWPGKHMHSHNYRIPEPFRDQVVVLIGGAASAVDISMDIAQVAKAVHIASRSVEAGILKKLSGNAIDNMWLHPMIESVQKDGTVIFYDGSVVLADVILHCTGYKYHFPFLDTSGIVTVDDNRVGPLYKHIFPPHLAPGLSFVGLPWKVLPFPMFEFQSKWIAGALSGRIGLPSQEEMMADVSAFYLSLEASDTPKHYTHNLADSQFEYDDWLALECGIPGVEEWRKKMYEATAKNKKVRPDKYRDKWEDEDLMLEAQKDFAGCRLNGAGDN* 458
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4974656 4978139 - Vvi2g507 Vvi2g507 783206

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g507 457 Gene3D - 13 432 IPR036188 -
Vvi2g507 457 PRINTS Flavin-containing monooxygenase (FMO) signature 11 27 IPR000960 GO:0050660|GO:0050661
Vvi2g507 457 PRINTS Flavin-containing monooxygenase (FMO) signature 35 59 IPR000960 GO:0050660|GO:0050661
Vvi2g507 457 PRINTS Flavin-containing monooxygenase (FMO) signature 193 207 IPR000960 GO:0050660|GO:0050661
Vvi2g507 457 PRINTS Flavin-containing monooxygenase (FMO) signature 220 235 IPR000960 GO:0050660|GO:0050661
Vvi2g507 457 PRINTS Flavin-containing monooxygenase (FMO) signature 273 300 IPR000960 GO:0050660|GO:0050661
Vvi2g507 457 PRINTS Flavin-containing monooxygenase (FMO) signature 338 351 IPR000960 GO:0050660|GO:0050661
Vvi2g507 457 PANTHER DIMETHYLANILINE MONOOXYGENASE 7 447 - -
Vvi2g507 457 SUPERFAMILY FAD/NAD(P)-binding domain 261 436 IPR036188 -
Vvi2g507 457 Gene3D - 181 286 IPR036188 -
Vvi2g507 457 Pfam Flavin-binding monooxygenase-like 11 238 IPR020946 GO:0004499|GO:0050660|GO:0050661
Vvi2g507 457 Pfam Flavin-binding monooxygenase-like 266 369 IPR020946 GO:0004499|GO:0050660|GO:0050661
Vvi2g507 457 PANTHER FLAVIN-CONTAINING MONOOXYGENASE 7 447 - -
Vvi2g507 457 SUPERFAMILY FAD/NAD(P)-binding domain 9 237 IPR036188 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g507 - - - vvi:100255688 921.383
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g507 . Blo03g00171 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme06g02605 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy06g02024 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002306 0 0 1 1 1 3 2 1 2 4 1 1 2 4 4 2 1 1 2 2 1 2 1 4 2 2 1 4 1 5 58