Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g509 ATGTGCAGGAAACTGAGGATAAAGAGATCGTTCAAAGTTCCAGCTATAAGCAATAAACTAGCAGATATACCTCCTGATGACTTCTCTTGGAGGAAATACGGGCAAAAGCCCATAAAAGGATCTCCACATCCAAGGTATTTTGATGTTCTTCCTACCTTTTCTTCATGTTATCAAGATCCTTTCAGACTGGCCATCCATTACTTTATGGTTGTTAGTTTCCATAGTCCAATATCAAAGTTTATAATTTGTGGGACTCTGTTCTGCTTGTTGCATCTTGGATCATCTATTCACATTTTTCTTTTTCTGGATCTGACATGA 318 37.74 MCRKLRIKRSFKVPAISNKLADIPPDDFSWRKYGQKPIKGSPHPRYFDVLPTFSSCYQDPFRLAIHYFMVVSFHSPISKFIICGTLFCLLHLGSSIHIFLFLDLT* 106
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4989460 4989778 + Vvi2g509 Vvi2g509 783208

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g509 105 SUPERFAMILY WRKY DNA-binding domain 22 47 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi2g509 105 Pfam Plant zinc cluster domain 3 22 IPR018872 -
Vvi2g509 105 ProSiteProfiles WRKY domain profile. 19 56 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi2g509 105 SMART WRKY_cls 24 76 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi2g509 105 Pfam WRKY DNA -binding domain 26 47 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi2g509 105 Gene3D WRKY domain 4 73 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi2g509 105 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 3 47 IPR044810 GO:0003700
Vvi2g509 105 PANTHER WRKY TRANSCRIPTION FACTOR 74-RELATED 3 47 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g509 - - - vvi:100267695 96.6709
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g509 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14598 PF03106 WRKY 5.40E-07 CL0274 Vvi TF