Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g511 ATGCGGGTGAAGGAGATGCATCCATTGTGTTGTATATCGCTGGAGAGTCCCGGAATAGGAGACCAGTCTCCGGAGGTGAGTAGAGCGGCAACTGCAGCCTCTTCCGGCGGATCTGACGGCAATGCGGGGCGGCCGGCGGGATCCGATACCAGCGTCGCCGGAGTTCTCTACAAGTGGACAAATTACGGCAAGGGTTGGAGATCCCGGTGGTTCCTGCTAAGGAACGGCGTTCTTTCTTACTCCAAGATTCGCCGGCCGGAGAGCCTCCACCTACCATCACCGGCAGACGACATCCGGGTGATAGGCGACGTCTCCACGAGTCGCCTCTCCAGGTTGGACAGTGGTGGCGGCAGACGAAAGCACCAGAAAAATGTTGGCATCGTTCATCTCAAGATCTCGTCATTTCGTGAGAGCAAGTCCGATGATCGAAGATTTTATATATTTACTGCTACAAAAACCCTTCATCTAAGGACCGAGTCAAAGAGAGATCGGGTGGCTTGGATAGAAGCTTTAGTCTCAACTCGAAGCCTATTTTCTTTTAGACCGCTAAATGATAATCTCTCCCTGGTACCAAATGATATATCTGTATCAACTGAAAGGCTTAAAAATCGTTTGCTTGAAGAGGGAGCCCATGAGGGACTAGTTAGAGATTGCGAACAGATCATGCTTTCTGAGTTCTCGGAAATACAAGGCCAAGTTAAAGTTCTTTGTGAAGAACGATCCAATTTGCTCGATACATTAAGACAGCTGGAGGCAGCTAATATTGAAGCTGAAGTTTCTGGAATTAATGATAGTGAATTTCAATTGACAAAGCATGAACTGTCCAGCCTAGGGCGTGGAAAATATAGTGAGTGCAGCACAACTGAATCATCTGATGATATTGAGAAACAAGAGCTTGAGGAAGTGTCAGATGAGGAGGAAACCTCTTTCTTTGACACTAGAGAGGATTTTGCTGAACCCACAATTCATACTGAGAATAGATTTTGTGAATCTAGATATCCACAAATTGAAAGGCGAAAGAAGCTTCCCGATCCAGTTGAGAAAGAGAGAGGGGTAAGTCTTTGGTCTATGATCAAAGACAATGTCGGAAAGGATCTCACACGAGTTTGTCTCCCTGTTTATTTTAATGAGCCAATATCATCCCTTCAGAAATGTTTTGAGGACTTGGAGTACTCTTATCTTTTGGATCGAGCGTATGAATATGGAAAAGCGGGAAACAGTCTCCTAAGAGTTCTACATGTTGCAGCTTTTGCGGTTTCTGGATATGCGTCCTCTGAAGGTCGGCATTGCAAACCCTTCAACCCATTGCTAGGGGAAACTTATGAAGCTGATTTTCCTGATAAAGGAATTCGCTTTTTCTCTGAGAAGGTTAGTCATCACCCAACACTCATTGCCTGCCATTGTGAAGGTAAAGGGTGGAAATTCTGGGCTGACAGTAACCTACGAACAAAATTTTGGGGACGATCAATTCAGCTCGACCCTGTGGGAGTTTTGACCCTTGAGTTTGATGATGGTGAGGTTTTCAAATGGAGCAAGGTCACGACCACCATTTATAATCTTATCCTTGGTAAAGTGTATTGTGATCACCATGGTACAATGCACATACAAGGTAATCGCCAACATTCATGCAAACTCAAGTTCAAAGAGCAGGCTCTTCTTGACAGAAATCCTCACCAAGTACATGGTTTTGTTGAGGATCTCACAGGGGAAAGGGCTGCTACCCTATTTGGGAAGTGGGATGACAGCATGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATGAGCTGACGTCAGGACTGCAGGAGAAGCTCCCACCCACGGATTCAAGACTTAGACCAGATCAACGACATCTAGAGAATGGAGAATATGAAAAGGCAAATGCAGAAAAACTACGGTTAGAGAAGCGGCAGAGGATGTCAAGGAAATTACAAGAAAATGGATGGAAACCAAAGTGGTTCGAGAGAGAAGGTGAAGATGGACCCTTTCGTTATATGGGCGGATACTGGGAAGCTCGGGACCAGGGAAAATGGGATGGGTGCCCAAATATATTCGGTGAATTCACAGAAGACCTTGTTAATTCCTATGAAGGGTCTGGATTATAA 2175 43.31 MRVKEMHPLCCISLESPGIGDQSPEVSRAATAASSGGSDGNAGRPAGSDTSVAGVLYKWTNYGKGWRSRWFLLRNGVLSYSKIRRPESLHLPSPADDIRVIGDVSTSRLSRLDSGGGRRKHQKNVGIVHLKISSFRESKSDDRRFYIFTATKTLHLRTESKRDRVAWIEALVSTRSLFSFRPLNDNLSLVPNDISVSTERLKNRLLEEGAHEGLVRDCEQIMLSEFSEIQGQVKVLCEERSNLLDTLRQLEAANIEAEVSGINDSEFQLTKHELSSLGRGKYSECSTTESSDDIEKQELEEVSDEEETSFFDTREDFAEPTIHTENRFCESRYPQIERRKKLPDPVEKERGVSLWSMIKDNVGKDLTRVCLPVYFNEPISSLQKCFEDLEYSYLLDRAYEYGKAGNSLLRVLHVAAFAVSGYASSEGRHCKPFNPLLGETYEADFPDKGIRFFSEKVSHHPTLIACHCEGKGWKFWADSNLRTKFWGRSIQLDPVGVLTLEFDDGEVFKWSKVTTTIYNLILGKVYCDHHGTMHIQGNRQHSCKLKFKEQALLDRNPHQVHGFVEDLTGERAATLFGKWDDSMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNELTSGLQEKLPPTDSRLRPDQRHLENGEYEKANAEKLRLEKRQRMSRKLQENGWKPKWFEREGEDGPFRYMGGYWEARDQGKWDGCPNIFGEFTEDLVNSYEGSGL* 725
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5062530 5074048 + Vvi2g511 Vvi2g511 783210

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g511 724 ProSiteProfiles PH domain profile. 49 176 IPR001849 -
Vvi2g511 724 MobiDBLite consensus disorder prediction 618 638 - -
Vvi2g511 724 SMART PH_update 50 178 IPR001849 -
Vvi2g511 724 Coils Coil 583 583 - -
Vvi2g511 724 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED PROTEIN 2A 617 713 - -
Vvi2g511 724 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED PROTEIN 2A 4 584 - -
Vvi2g511 724 Coils Coil 618 619 - -
Vvi2g511 724 Pfam Oxysterol-binding protein 617 696 IPR000648 GO:0008289
Vvi2g511 724 Pfam Oxysterol-binding protein 353 585 IPR000648 GO:0008289
Vvi2g511 724 Gene3D - 439 593 - -
Vvi2g511 724 Pfam Pleckstrin homology domain 54 171 - -
Vvi2g511 724 SUPERFAMILY PH domain-like 49 173 - -
Vvi2g511 724 Gene3D - 639 698 - -
Vvi2g511 724 MobiDBLite consensus disorder prediction 20 47 - -
Vvi2g511 724 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 4 584 IPR000648 GO:0008289
Vvi2g511 724 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 617 713 IPR000648 GO:0008289
Vvi2g511 724 SUPERFAMILY Oxysterol-binding protein-like 348 714 IPR037239 -
Vvi2g511 724 Gene3D - 46 177 IPR011993 -
Vvi2g511 724 Coils Coil 233 253 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g511 K20456 OSBP; oxysterol-binding protein 1 - vvi:100253994 1350.5
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g511 Blo02g01049 Blo03g00169 Bda06g00037 . Bpe05g00588 Bpe07g00165 . . Cmo06g00789 Cmo16g01114 . Cma15g01141 Car02g01307 Car15g01037 . Cpe14g00881 Cpe05g00242 Bhi11g00212 . . . . . . Cla10g00276 Cam10g0285 Cec10g0293 Cco10g0290 Clacu10g0286 Cmu10g1126 Cre10g0534 . . Cone6ag0690 Cone9ag0692 Lsi07g01319 . . Cme06g02601 . Blo19g00281 Bda07g00005 . . . Bma05g00770 . . . Cmo15g01200 Cma06g00769 Cma16g01066 Car06g00687 Car16g01012 Cpe08g00749 . Bhi12g00421 . . Lac11g2262 Hepe06g1148 . Lcy12g1808 . . . . . . . . Csa03g04675 . Cme09g01638
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000881 4 7 4 5 4 2 5 2 2 2 2 2 4 2 2 4 2 4 4 2 2 2 2 2 2 2 2 3 4 2 88