Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g512 ATGTTTTCAATCAAATCTAAAAAATTAGGGAGATTAATTTTGACATCTTCAATCAAATCAATGAGCCCACCCATAAATTTCAGCTTACTGCATACTGCATCTACAACATTTCCCTTTTTTTTTCTTCTTCACATTATTTTCAATAAATATCTACCAAAATCTGATAAGACTTTTGAATTTCAATTGACAAAGCATGAACTGTCCAGCCTAGGGCGTGGAAAATATAGTGAGTGCAGCACAACTGAATCATCTGATGATATTGAGAAACAAGAGCTTGAGGAAGTGTCAGATGAGGAGGAAACCTCTTTCTTTGACACTAGAGAGGATTTTGCTGAACCCACAGTCAGTTGTGGATATCCACAAATTGAAAGGCGAAAGAAGCTTCCCGATCCAGTTGAGAAAGAGAAAGGGGTAAGTCTTTGGTCTATGATCAAAGACAATGTCGGAAAGGATCTCACACGAGTTTGTCTCCCTGTTTATTTTAATGAGCCAATATCATCCCTTCAGAAATGTTTTGAGGACTTGGAGTACTCTTATCTTTTGGATCGAGCATATGAATATGGAAAAGCGGGAAACAGTCTCCTAAGAGTTCTACATGTTGCAGCTTTTGCGGTTTCTGGATATGCGTCCTCTGAAGGTCGGCATTGCAAACCCTTCAACCCATTGTTAGGGGAAACTTATGAAGCTGATTTTCCTGATAAAGGAATTCGTTTTTTCTCTGAGAAGGTTAGTCATCACCCAACACTCATTGCCTGCCATTGTGAAGGTAAAGGGTGGAAATTCTGGGCTGACAGTAACCTACGAACAAAATTTTGGGGACGATCAATTCAGCTCGACCCTGTGGGAGTTTTGACCCTTGAGTTTGATGATGGTGAGGTTTTCAAATGGAGCAAGGTCACGACCACCATTTATAATCTTATCCTTGGTAAAGTGTATTGTGATCACCATGGTACAATGCACATACAAGGTAATCACCAACATTCATGCAAACTCAAGTTCAAAGAGCAGGCTCTTCTTGACAGAAATCCTCACCAAGTACATGGTTTTGTTGAGGATCTCACAGGGGAAAGGGCTGCTACCCTATTTGGGAAGTGGGATGACAGCATGTATTACGTTCTTGGAGACAGAACTGGCAAGCTGAAGGACTGTAATGGGTCCCCGGATGCCTCCTTGTTGTGGAAAAGGAATAGGCCACCTCCTTGTCTCACTCGGTACAACTTAACGTCATTTGCAATTACACTAAATGAGCTGACGTCAGGACTGCAGGAGAAGCTCCCACCCACGGATTCAAGACTTAGACCAGATCAACGACATCTAGAGAATGGAGAATATGAAAAGGCAAATGCAGAAAAACTACGGTTAGAGAAGCGGCAGAGGATGTCAAGGAAATTACAAGAAAATGGATGGAAACCAAAGTGGTTCGAGAGAGAAGGTGAAGATGGACCCTTTCGTTATATGGGCGGATACTGGGAAGCTCGGGACCAGGGAAAATGGGATGGGTGCCCAAATATATTCGGTGAATTCACAGAAGACCTTGTTAATTCCTATGAAGGGTCTGGATTATAA 1566 41.95 MFSIKSKKLGRLILTSSIKSMSPPINFSLLHTASTTFPFFFLLHIIFNKYLPKSDKTFEFQLTKHELSSLGRGKYSECSTTESSDDIEKQELEEVSDEEETSFFDTREDFAEPTVSCGYPQIERRKKLPDPVEKEKGVSLWSMIKDNVGKDLTRVCLPVYFNEPISSLQKCFEDLEYSYLLDRAYEYGKAGNSLLRVLHVAAFAVSGYASSEGRHCKPFNPLLGETYEADFPDKGIRFFSEKVSHHPTLIACHCEGKGWKFWADSNLRTKFWGRSIQLDPVGVLTLEFDDGEVFKWSKVTTTIYNLILGKVYCDHHGTMHIQGNHQHSCKLKFKEQALLDRNPHQVHGFVEDLTGERAATLFGKWDDSMYYVLGDRTGKLKDCNGSPDASLLWKRNRPPPCLTRYNLTSFAITLNELTSGLQEKLPPTDSRLRPDQRHLENGEYEKANAEKLRLEKRQRMSRKLQENGWKPKWFEREGEDGPFRYMGGYWEARDQGKWDGCPNIFGEFTEDLVNSYEGSGL* 522
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5078323 5098974 + Vvi2g512 Vvi2g512 783211

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g512 521 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 59 510 IPR000648 GO:0008289
Vvi2g512 521 Pfam Oxysterol-binding protein 139 493 IPR000648 GO:0008289
Vvi2g512 521 Gene3D - 225 396 - -
Vvi2g512 521 Gene3D - 436 495 - -
Vvi2g512 521 SUPERFAMILY Oxysterol-binding protein-like 134 511 IPR037239 -
Vvi2g512 521 PANTHER BNAC03G64980D PROTEIN 59 510 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g512 K20456 OSBP; oxysterol-binding protein 1 - vvi:100252278 940.258
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g512 . . . Bda08g00569 . . Bma07g01601 Bma14g00510 . . . . Car02g01309 . . . . Bhi11g00211 Tan01g2012 . . . . . . . . . . . . . . . . . Csa05g00404 Chy09g01108 . Blo03g00415 . Bda07g00005 Bda09g00095 Bpe08g01434 Bpe11g00265 . . . . . . . . . . Cpe13g00226 Bhi12g00422 . . . . . . Cla01g00377 Cam01g0396 Cec01g0388 Cco01g0408 Clacu01g0397 Cmu01g0378 Cre09g2134 Lsi09g00408 . Chy06g02027 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000881 4 7 4 5 4 2 5 2 2 2 2 2 4 2 2 4 2 4 4 2 2 2 2 2 2 2 2 3 4 2 88