Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g526 ATGATTTATCAGCAGCAACAGCAACAGCAACAGCTGGAAACCCCTGAAGAAAAGCCTCAGATTTTCAATGCACAACCGGCAATTAATCACCATCAACGGTCCCAAAATCCTAACTATTTTCCGGTACCGCCCTACACCCAACAAGACCAGCACCACCTCCTTCAGCCGCCTCAAGCCAAGCGGCACAACCCTGGCGGTCTGGACCCGAACTCTCAGATGCCAAAAGTCCCTTTTGCTGATCTGGGTCATGAGTTTTTACTCAGAAGACAGCAGCAGCAGCCACTGTGTTTCACTAACCAGCTGCAATTGCTTCCACAACATCAGCTTCAGCAGAAGCCGTTGATGTTGAGCAAGCAGAAGATGGTGGGAGGCGGGGAAGAAATGGCGCCCCAATCCCATCACCAGCAGCAGCAGCAGCAGCAGCAGCAACAACAACAGGCTTTGCTGGACCAGCTCTGCAAGGCAGCAGAGCTGGTAGGCACTGGGAATTTCTCAATCGCGCAAGGGATATTGGCGCGGCTCAATCATCAGCTCTCCCCGGAAGGAAAGCCGTTTCAGAGGGCTGCTTTCTACTTCAAGGAGGCTTTGCAACTGATCCTTATGAATAACAACCCAGCCGCCTCCCCTCCACTAAGGAGTCCCACACCATTTGACGTCATCTTCAAGATGGGTGCTTACAAGGTGTTCTCTGATGTCTCTCCTCTTATTCAATTTGCAAATTTCACTTGCAACCAAGCCCTCCTGGAAGCTCTTGATGATGCTGACAGAATCCACATTATAGACTTTGATATCGGGTTTGGTGCGCAATGGGCTTCCTTTATGCAGGAGCTTCCTGTGAGGAATAGGGGTGCCCCATCATTGAAAATTACAGCCCTTGCCTCTCCTTCCACCACCCACCATCCCCTGGAGCTCAAGCTTTTGCGTGAAAATCTAACACTATTTGCTGATGAAATTGGAATTGCCTTTGAGCTTCAAGTGGTGAACTTTGATTCCTTCGACCCCGTTTCCTACTCAATGCCTTATTTTCGAACCTCTGAAAATGAGGCAATTGTGGTGAATTTCCCTATCTGGTCCTCTTCCAATCACCCGGCTGCCCTGCCCTTGCTCCTGCGTTTTATAAAGCAGCTCTCACCTAAGCTTATGGTCTCTTTGGATAGAGGTTGTGATCGAGGTGACCTCCCATTGCAGCAACATCTCCTGCATGGCATCCAATCCTACACCAACCTCTTGGAATCTCTTGATGCTACTAATGCGATGACAGACACTGTAAGCAAAATTGAGAGGTTCCTCTTCCAGCCGAGGATAGAAAGCACTACTCTGGGTCGACTCCGTTCCCCCGACAAAATGCCTCCTTGGAAAACACTCTTTGCCTCAGCTGGATTCACACCTGTATCCTTCAGTAACTTCACCGAAAGTCAAGCAGATTGTGTGGTGAAGAGGACACTTGTGAGGGGATTTCATGTTGAGAAGCGTCAGGCATTGCTCATTCTCTGCTGGCAGAATCGGGAGCTCATCTCGGCTTCTGCTTGGAGGTGCTGA 1539 49.77 MIYQQQQQQQQLETPEEKPQIFNAQPAINHHQRSQNPNYFPVPPYTQQDQHHLLQPPQAKRHNPGGLDPNSQMPKVPFADLGHEFLLRRQQQQPLCFTNQLQLLPQHQLQQKPLMLSKQKMVGGGEEMAPQSHHQQQQQQQQQQQQALLDQLCKAAELVGTGNFSIAQGILARLNHQLSPEGKPFQRAAFYFKEALQLILMNNNPAASPPLRSPTPFDVIFKMGAYKVFSDVSPLIQFANFTCNQALLEALDDADRIHIIDFDIGFGAQWASFMQELPVRNRGAPSLKITALASPSTTHHPLELKLLRENLTLFADEIGIAFELQVVNFDSFDPVSYSMPYFRTSENEAIVVNFPIWSSSNHPAALPLLLRFIKQLSPKLMVSLDRGCDRGDLPLQQHLLHGIQSYTNLLESLDATNAMTDTVSKIERFLFQPRIESTTLGRLRSPDKMPPWKTLFASAGFTPVSFSNFTESQADCVVKRTLVRGFHVEKRQALLILCWQNRELISASAWRC* 513
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5202973 5204512 + Vvi2g526 Vvi2g526 783225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g526 512 MobiDBLite consensus disorder prediction 29 54 - -
Vvi2g526 512 MobiDBLite consensus disorder prediction 121 143 - -
Vvi2g526 512 Pfam GRAS domain family 149 511 IPR005202 -
Vvi2g526 512 PANTHER SCARECROW-LIKE PROTEIN 6 24 511 - -
Vvi2g526 512 MobiDBLite consensus disorder prediction 29 77 - -
Vvi2g526 512 ProSiteProfiles GRAS family profile. 139 511 IPR005202 -
Vvi2g526 512 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 24 511 IPR005202 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14599 PF03514 GRAS 1.20E-89 CL0063 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g526 - - vri:117932952 953.355