Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g532 ATGGCTTCATCTCTAGCCCTACGCCGTGCCACTTCCTCTCCTCTCTTCACAAAACTTGTCAGCCCAATACGGGTTGCCTCTGCTTCTCGCTCCTTCAATACCAACGCTCAGGTGGCCGACTACAATGATGGCGAAGACCGCCGCACCGTCTCTCGCCCCCGGTATTCTCCTTCCAATCTCTTCTCAGATGTGTTTGATCCGTTTTCTCGGACGAGAAGTTTGAGCCAGGTGCTGAACTTGATGGATCAGTTCATGGAGAACCCATTAGTGGCAGCATCACGAGGGATGGGAGCTGTGTCGAGAAGAGGATGGGACGTAAAGGAGGAGAAAGACGCTCTGTTCGTAAGAATGGACATGCCGGGACTGGGGAAAGAGGACGTGAAGGTGTCAGTGGAGCAGAACACACTCATCATCAAAGGCGAAGGAGGCAAAGAATTGGAGAACGATGAGACTGGAAGGAAATACACCAGCAGAATCGATCTGCCGGCCAATCTGTACAAGTTTGATGAGATCAAGGCAGAGATGAAGAATGGTGTACTGAAGGTGGTGGTTCCTAAAGTTAAGGAAGATGGGAAGAAAGATGCGTTTCAAGTCAATATCAATTGA 606 50.0 MASSLALRRATSSPLFTKLVSPIRVASASRSFNTNAQVADYNDGEDRRTVSRPRYSPSNLFSDVFDPFSRTRSLSQVLNLMDQFMENPLVAASRGMGAVSRRGWDVKEEKDALFVRMDMPGLGKEDVKVSVEQNTLIIKGEGGKELENDETGRKYTSRIDLPANLYKFDEIKAEMKNGVLKVVVPKVKEDGKKDAFQVNIN* 202
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5248527 5250185 - Vvi2g532 Vvi2g532 783231

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g532 201 CDD ACD_sHsps-like 105 178 - -
Vvi2g532 201 Pfam Hsp20/alpha crystallin family 105 200 IPR002068 -
Vvi2g532 201 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 95 201 IPR002068 -
Vvi2g532 201 SUPERFAMILY HSP20-like chaperones 71 193 IPR008978 -
Vvi2g532 201 Gene3D - 60 200 IPR008978 -
Vvi2g532 201 PANTHER 23.5 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 1 200 IPR044656 -
Vvi2g532 201 PANTHER HEAT SHOCK 22 KDA PROTEIN, MITOCHONDRIAL-LIKE 1 200 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g532 K13993 HSP20; HSP20 family protein - vvi:100243757 390.963
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi2g532 Vvi16g417 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g532 Blo02g01045 Blo03g00162 . . Bpe05g00583 . . . . . . . . . . Cpe14g00946 . Bhi11g00197 . . . . . . Cla10g00259 Cam10g0265 Cec10g0273 Cco10g0271 Clacu10g0267 Cmu10g1110 Cre10g0518 Cone8ag0395 Cone12ag0380 . . . . . Cme06g02575 . . . . . . . Bma12g00642 . . . . Cma16g01142 . Car16g01081 . . . . . . . . . . . . . . . . . Csa03g00278 Chy06g02044 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002899 1 4 2 2 1 2 3 2 2 2 2 2 2 2 2 1 2 2 2 2 2 1 1 1 1 1 1 2 1 3 54