Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g539 ATGGCTCCTTTCACCTCTTTCTTCTCCATCCTCACCTTGTTCTTGTGCTATGCCCCTTTGAAGTACTCCGCCACCATCATTCCGTCAACCAACTCTACAAAGCGCCACCACAAATGGGTTGGACCCTCCGGTCACCTGTTCATCACCGTCGACGCTCGCGGCACCGGTGACTTCTTGTCTGTCCAGGCCGCCGTCGACGCGGTGCCTGATAACAATACCAAGAACGTTCTCATTAAAATCAACGCCGGATGCTACGTAGAGAAGGTGGTGGTGCCGGTGACAAAGCCATACATCACGTTTCAAGGAGACGGGAGGGACGAGACGATGATAGAGTGGCATGATAGAGCAAGTGACCGCGGCACCAATGGCCAACAGCTGCGTACTTATAGAACTGCTTCTGTCATTGTTTTTGCTAATTATTTTTCTGCTAGAAACATCAGCTTCAAGAATACAGCACCGGCACCGATGCCGGGGATGCAGGGATGGCAGGCGGCAGCATTCCGAATATCGGGGGACAAGGCCTACTTCTCTGGCTGCGGTTTCTATGGTGCACAAGACACTCTCTGCGACGACGCCGGACGGCATTATTTCAAGGAGTGTTATATTGAGGGCTCTATAGACTTCATTTTTGGCAATGGTCGCTCCATGTACAAAGACTGCGAACTGCACTCAATAGCCACGAGGTTCGGTTCCATAGCGGCGCAAGATAGGAACTCGCCCGATGAAAAAACCGGGTTCGCATTCGTGGGCTGCAAGGTGACTGGCAGAGGCCCACTCTACGTGGGTCGGGCCATGGGCCAGTTCTCCAGGATAGTCTACTCATACACGTACTTTGATGATGTGGTGGCACATGGGGGGTGGGATGATTGGGACCACACCAGCAACAAGAACAAGACTGTATTTTTCGGAGTGTACAAGTGCTGGGGCCCAGGAGCAGAGGCAGTGAGGGGGGTGACATGGGCCAGAGAGTTAGATTTTGAGACGGCCCATCCATTCCTTGTAAAGAGTTTCGTCAATGGAAGGCACTGGATTGCACCCTCTGATGCTTAG 1050 52.67 MAPFTSFFSILTLFLCYAPLKYSATIIPSTNSTKRHHKWVGPSGHLFITVDARGTGDFLSVQAAVDAVPDNNTKNVLIKINAGCYVEKVVVPVTKPYITFQGDGRDETMIEWHDRASDRGTNGQQLRTYRTASVIVFANYFSARNISFKNTAPAPMPGMQGWQAAAFRISGDKAYFSGCGFYGAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCELHSIATRFGSIAAQDRNSPDEKTGFAFVGCKVTGRGPLYVGRAMGQFSRIVYSYTYFDDVVAHGGWDDWDHTSNKNKTVFFGVYKCWGPGAEAVRGVTWARELDFETAHPFLVKSFVNGRHWIAPSDA* 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5378525 5380976 + Vvi2g539 Vvi2g539 783238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g539 349 Pfam Pectinesterase 48 340 IPR000070 GO:0030599|GO:0042545
Vvi2g539 349 ProSitePatterns Pectinesterase signature 2. 202 211 IPR033131 -
Vvi2g539 349 PANTHER PECTINESTERASE 68-RELATED 21 348 - -
Vvi2g539 349 SUPERFAMILY Pectin lyase-like 47 346 IPR011050 -
Vvi2g539 349 Gene3D - 46 348 IPR012334 -
Vvi2g539 349 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 21 348 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g539 - - vvi:100259241 729.169