Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g541 ATGTTATCTTTGTTCCTAAATCATGATCTCTTTCTCTGTTGGCAGGAGAACATCCCTCTTGAAGAAGTTTTTGAGAAATTAAAATGCACAAGAGAAGGTCTCGGCTTGGATGAGGTAGAGAAGCGATTGAAGGTGTTTGGGCACAACAAACTTGAAGAGAAAAAGGAAAATAAGATTATCAAATTTTTGGGATTTATGTGGAATCCTCTCTCATGGGTTATGGAAGCAGCAGCAATCATGGCCATTTCTCTTGCACTTAAAGAGAATAAGGATGTAGATTACATAACCTTTCTTGGCATTCTGGCACTGCATATTATCAATTCAGCCATCAGCTTTGTAGAGGAAAACAAAACTGGCAATGCTGTGGCTCGCCTTATGGCTTGGCTGGCTCCAAAAGCAACGGTTTTACGAGCTGGCAAATGGAGTAAGGAATATGCTTCTGTGTTGGTTCCTGGAGACATTGTCAGTATCAAACCAGGAGATATCATCCCTGCTGATGCACGTTTACTTGAAGGAGATCCTCTGAAAATTGATCAGGGTTACTTATTTGGAAAT 555 40.54 MLSLFLNHDLFLCWQENIPLEEVFEKLKCTREGLGLDEVEKRLKVFGHNKLEEKKENKIIKFLGFMWNPLSWVMEAAAIMAISLALKENKDVDYITFLGILALHIINSAISFVEENKTGNAVARLMAWLAPKATVLRAGKWSKEYASVLVPGDIVSIKPGDIIPADARLLEGDPLKIDQGYLFGN 185
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5393506 5396372 - Vvi2g541 Vvi2g541 783240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g541 185 PANTHER CALCIUM-TRANSPORTING ATPASE 15 184 - -
Vvi2g541 185 Gene3D - 131 184 - -
Vvi2g541 185 SMART Cation_ATPase_N_a_2 13 86 IPR004014 -
Vvi2g541 185 Gene3D - 93 130 - -
Vvi2g541 185 PANTHER PLASMA MEMBRANE ATPASE 15 184 - -
Vvi2g541 185 Pfam E1-E2 ATPase 129 182 - -
Vvi2g541 185 SUPERFAMILY Calcium ATPase, transmembrane domain M 16 132 IPR023298 -
Vvi2g541 185 SUPERFAMILY Calcium ATPase, transduction domain A 131 184 IPR008250 -
Vvi2g541 185 Pfam Cation transporter/ATPase, N-terminus 17 80 IPR004014 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi2g541 Vvi15g325 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g541 K01535 - vvi:104882170 312.383