Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g544 ATGCTTATCTGCAAATCAATGGCATTTTCTTCAGTCTCTCGATTACTGCCATACTCAATTCGCCACAAAAACCCTAACTTCTCAACTGCGCTGTCATCTGCGGAGAAATACTACACTCACCTGCAGAAATATGGGGATAATATCGAGAAAACCCTACCTGCGGTGAGGGCTAAATTAGACTCTTCATGTGTCAATGAGGTCTTAAATAGATGTTCCCTAACTCAGTCTCAACTGGGTCTTCGGTTTTTCATATGGGCTGGTGTCCAATCATATTATAGACACAGTTCATATTTGTATAGCAAAGCTTGTGAACTATTCAGAATTAATCAAAATCCAAGAGCCATTATTGATGTTATAGAAGCTTATAGAGTGGAGGGGACTGTGGTTAGTGTCAAGACATTTAATGTGGTTTTGCATCTATTGAGGGAAGCAAAGCTTGCTGATGAGGCATTATGGATATTGAAGAAAATGGCAGAATTTAATATAAGGGCTGACACTGTTGCGTATAACAGTGTTATACGTCTGTTTTGTGAGAAAGGTGATATGGATTTGGCTGCAGGATTGATGAAAGAGATGGGTTTAATTGATCTTTATCCTAATATGATTACTTATGTCACCATGATTAAAGGGTTCTGTAATGTGGGTCGGTTGGAGGATGCTTGTAAGTTGTTTAAGGTTATGAAAGGACATGGGTGCTCGCCCAATGTGGTCGTGTACACTGTGATTCTTGATGGGGTTTGTAGATTTGGGAGTTTGGAAAGAGCTTTGGAGTTGTTAGGGGAGATGGAGAAAGAGAGTGGTGATTGTAGTCCCAATGTTGTTACATATACATCTATGATTCAGAGTTGTTGTGAGAAGGGTAAGTTGATGGAGGCATTGGAGATTTTGGATCGAATGAGAGCTTGTGGGTGTGCTCCAAATCGGGTCACAGTTAGTATTTTGATGAAGGGGTTTTGTGCAGAGGGGCGTGTAGAGGAGGCTTTTAAATTAATTGATAAAGTTGTTGCTGGAGGTAATGTATCATACGGTGAGTGCTATAGTTCTCTTATTGTGTCATTGGTAGGGAATAAAAACCTTCAGGAGGCAGAGAAGCTCTTTAGGAGGATGTTAGCAAATGCTGTGAAGCCTGATGGTTTGGCATGTGGCACTTTGATAAAGGCGCTTTGTTTGGAGGGACGGGTCTTGGATGGGTTTCACTTATTTGATGAATTTGAGAATATGGAAGGATTGTCATACCTTGATTCTGATATTTATTCCATTCTTTTAGTTGGACTCTCTCAAAAAAGGCATTCGGTAGAAGCTGTGAAACTAGCACGGTTAATGGTTGATAGAGGAATTCAACTGAAGACTCCTTACTTTGACAGTATAGTTGAACACCTGAAGGAATCTGGAGACAAGGAGATATGCACACACTTCTGTACCCTGGCTCTGCTTTACAATGTTCTTTGGAATAAGATTCAAGCAAACTTCTGGTGGTGTGATAGGTTTGATGAGTTCATACTTCTTGGTGCTGTTCTGTTTATGTCTGATGTTTTGTGCCTAAAGTGGCTTGGTGGTCATGGAGTGGTCAGAATAAATGAGATGTAA 1587 40.45 MLICKSMAFSSVSRLLPYSIRHKNPNFSTALSSAEKYYTHLQKYGDNIEKTLPAVRAKLDSSCVNEVLNRCSLTQSQLGLRFFIWAGVQSYYRHSSYLYSKACELFRINQNPRAIIDVIEAYRVEGTVVSVKTFNVVLHLLREAKLADEALWILKKMAEFNIRADTVAYNSVIRLFCEKGDMDLAAGLMKEMGLIDLYPNMITYVTMIKGFCNVGRLEDACKLFKVMKGHGCSPNVVVYTVILDGVCRFGSLERALELLGEMEKESGDCSPNVVTYTSMIQSCCEKGKLMEALEILDRMRACGCAPNRVTVSILMKGFCAEGRVEEAFKLIDKVVAGGNVSYGECYSSLIVSLVGNKNLQEAEKLFRRMLANAVKPDGLACGTLIKALCLEGRVLDGFHLFDEFENMEGLSYLDSDIYSILLVGLSQKRHSVEAVKLARLMVDRGIQLKTPYFDSIVEHLKESGDKEICTHFCTLALLYNVLWNKIQANFWWCDRFDEFILLGAVLFMSDVLCLKWLGGHGVVRINEM* 529
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5412974 5419596 - Vvi2g544 Vvi2g544 783243

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g544 528 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 342 376 IPR002885 -
Vvi2g544 528 TIGRFAM PPR: pentatricopeptide repeat domain 274 307 IPR002885 -
Vvi2g544 528 TIGRFAM PPR: pentatricopeptide repeat domain 345 377 IPR002885 -
Vvi2g544 528 TIGRFAM PPR: pentatricopeptide repeat domain 237 272 IPR002885 -
Vvi2g544 528 TIGRFAM PPR: pentatricopeptide repeat domain 309 334 IPR002885 -
Vvi2g544 528 TIGRFAM PPR: pentatricopeptide repeat domain 202 236 IPR002885 -
Vvi2g544 528 TIGRFAM PPR: pentatricopeptide repeat domain 167 192 IPR002885 -
Vvi2g544 528 Gene3D Tetratricopeptide repeat domain 342 489 IPR011990 GO:0005515
Vvi2g544 528 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 130 164 IPR002885 -
Vvi2g544 528 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 307 341 IPR002885 -
Vvi2g544 528 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 235 265 IPR002885 -
Vvi2g544 528 Gene3D Tetratricopeptide repeat domain 265 335 IPR011990 GO:0005515
Vvi2g544 528 Gene3D Tetratricopeptide repeat domain 33 194 IPR011990 GO:0005515
Vvi2g544 528 Gene3D Tetratricopeptide repeat domain 195 264 IPR011990 GO:0005515
Vvi2g544 528 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 22 473 - -
Vvi2g544 528 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 165 199 IPR002885 -
Vvi2g544 528 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 22 473 - -
Vvi2g544 528 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 200 234 IPR002885 -
Vvi2g544 528 Pfam PPR repeat family 271 319 IPR002885 -
Vvi2g544 528 Pfam PPR repeat family 199 248 IPR002885 -
Vvi2g544 528 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 272 306 IPR002885 -
Vvi2g544 528 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 414 448 IPR002885 -
Vvi2g544 528 Pfam PPR repeat 417 446 IPR002885 -
Vvi2g544 528 Pfam PPR repeat 345 371 IPR002885 -
Vvi2g544 528 Pfam PPR repeat 382 405 IPR002885 -
Vvi2g544 528 Pfam PPR repeat 162 192 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g544 - - - vvi:100853058 931.784
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g544 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006702 0 3 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 1 2 1 2 3 1 0 1 4 1 35