Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g56 ATGAGAGGTCTTTATAGTTTGTTTGCTCGTGGACCAATGTATATTATTATGAAGGAGAAAAGAAGTATAGCTACCATTCTCTTCATTTCTCTTCTTCTCTTCGCCTCAGACTCTCATTCACTGCCTCTCTCCACCAGAGGAAGATGGGTTGTGGACGATGCGTCCGGCCAAAGAGTGAAGCTGGCCTGTGTGAATTGGATTTCCCACTTGCAGGCCATGGTGGTGGAGGGTCTCCACAAGAGGCCACTGAGAGAAATTGCTGGTGGGATCACTGCCATGGGTTTTAACTGCGTCCGCCTCACATGGGCGACCTACATGTTTACCAGGCCGTCTTATGGGAACCGGAGTGTGGCGGAGAGTCTTGGTGAGTTGGGCCTGAGTGAGGCCAAGGAAGGGGTGGCTAGGAACAATCCTGAGCTGTTGAATCTGAGTCTGGTAGAAGCCTATGAGGCAGTGGTAGATGAGCTTGGAAGGCATGGAGTGATGGTGGTGCTTGATAACCATGTGAGCAAGCCAAAGTGGTGCTGTGCTGAAGATGATGGGAATGGGTTCTTTGGAGATAAATATTTTCATCCCAAGGAATGGTTGCAGGGTTTAACCAAAGTGGCCCATCGGTTCAAGGATAAGTCTCAGGTGGTGGCCATGAGCATGCGAAACGAGCTACGAGGCCCAAACCAAACAGAACATATCTGGTATAAACAAATCCGAAAAGGAGGCAGAACTATTCATAGCATCAACCCAAATCTTCTCGTCATTGTTTCAGGGTTGGAGTTCGACACTGACCTCAGCTTCCTGAAGCAAAAGCCCCTGAAATTAAAGCTTCCCAACAAGGTAGTATTTGAGGCACATTGGTACTCCTTCAGCTCCATCACAGGCGGTGTGGAGTGGACTGAGCAGCCACTGAATCAAATCTGCCACAATCGGACCGAGTGGTTCGAGTCAGGAGCCGCATTTGTGGGCACCGGTTCGAACCCGGCTCCGTTTTTTCTGAGTGAGTTTGGTATAGATTTGAGAGGCGTGAACCCGAGAGACAACCGATTCTTCGGCTGCTTCCTTGCGTTCGTCGCCCAGAGGGACTTGGACTGGGCGCTCTGGACCTTGCAGGGCAGCTATTACTACAGAGATGGGGTTGTGGGGCAGGAGGAGACTTATGGGGTGCTGGATTACAACTGGGACAAGCCCAGGAATCCCAAATTCCTAAAGAGGATAAGGATTCTGCAAGACATTTTACAAGATCCCAATTCAAACGTTCCAAAGTACCACTTAATTTTCCACCCACGAAGCGGGCGCTGCGTGAGCGTTAAGGGAGAGGGCCAGGACCAGATTCATGGAAGGAATTGCAAGAAGGGAAGTAGATGGAGCCACGACGGGAATGGAGGAGCGATAAGGCTGATGGGCAGCGGGTTGTGTCTGAAGGCGGTTGGGGACGGGCTTCCTGCGAAGCTCTCAACTGACTGCAGCAGCCCCCAGGCGAGGTGGAAACTGATCTCCAAGTCCAAACTCCACATAGCTGCCATGGATGAGCAGGGGAAGCCCTTGTGCTTGGATGGGAAAAATTCAAACTCCTCTTCAATTTTAACAAGGACGTGTATATGTGCATTACAAGATGGAGATGGTTCCGATCTTGACTGCCTCACGAATCCGCAAAGGCAGTGGTTTAAATTCGTCCCCTCGAATCTGCCCTAG 1686 50.65 MRGLYSLFARGPMYIIMKEKRSIATILFISLLLFASDSHSLPLSTRGRWVVDDASGQRVKLACVNWISHLQAMVVEGLHKRPLREIAGGITAMGFNCVRLTWATYMFTRPSYGNRSVAESLGELGLSEAKEGVARNNPELLNLSLVEAYEAVVDELGRHGVMVVLDNHVSKPKWCCAEDDGNGFFGDKYFHPKEWLQGLTKVAHRFKDKSQVVAMSMRNELRGPNQTEHIWYKQIRKGGRTIHSINPNLLVIVSGLEFDTDLSFLKQKPLKLKLPNKVVFEAHWYSFSSITGGVEWTEQPLNQICHNRTEWFESGAAFVGTGSNPAPFFLSEFGIDLRGVNPRDNRFFGCFLAFVAQRDLDWALWTLQGSYYYRDGVVGQEETYGVLDYNWDKPRNPKFLKRIRILQDILQDPNSNVPKYHLIFHPRSGRCVSVKGEGQDQIHGRNCKKGSRWSHDGNGGAIRLMGSGLCLKAVGDGLPAKLSTDCSSPQARWKLISKSKLHIAAMDEQGKPLCLDGKNSNSSSILTRTCICALQDGDGSDLDCLTNPQRQWFKFVPSNLP* 562
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 662066 666143 - Vvi2g56 Vvi2g56 782755

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g56 561 SUPERFAMILY (Trans)glycosidases 41 399 IPR017853 -
Vvi2g56 561 Gene3D - 418 538 - -
Vvi2g56 561 CDD RICIN 420 530 IPR000772 -
Vvi2g56 561 Gene3D Glycosidases 40 409 - -
Vvi2g56 561 PANTHER CELLULASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_5G14560) 24 557 - -
Vvi2g56 561 Pfam Cellulase (glycosyl hydrolase family 5) 82 368 IPR001547 GO:0004553|GO:0071704
Vvi2g56 561 SUPERFAMILY Ricin B-like lectins 416 530 IPR035992 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g56 K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4] - vvi:100257079 1128.24
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g56 . . . . . . . . . . Cma02g01000 . . . . . . . . . . . . . . . . . . . . . . . . . . Chy09g01268 . . . . . . . . . . Cmo02g01450 . . . . . . . Bhi12g00177 . . . . . Lcy12g1599 Cla01g00219 Cam01g0226 Cec01g0217 Cco01g0227 Clacu01g0221 Cmu01g0214 Cre09g2295 Lsi09g00206 . . Cme09g01809
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000102 1 5 0 0 1 17 0 16 15 11 16 15 7 9 8 11 14 2 0 12 12 11 2 7 10 18 6 7 5 3 241