Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g570 ATGTACAGGGAAAGGGGTGTTGCCGCTGCTGGATCCAAGGCTGAGATGGCCTCAATTGATCGGAAGAGAATCAATGATGCGCTGGACAAGCACTTGGAGCGGTCGTCGCCTTCCACGTCCAAGGGATTGAACGGCAAGGATAAGGACAGAGTATCGGCGCAGTCTACTCTGATAGAGGAATCTGAAACAGACACTGAAGAGTCAGATGTTAGTGGCTCTGATGGGGATGATGCATCATGGATCTCATGGTTTTGCCATATGCGAGGGCATGAGTTCTTCTGTGAAGTTGACGATGATTACATCCAAGATGACTTTAACCTCTGTGGTTTGAGCAGTCAAGTTCCTTATTATGATTATGCACTTGACTTGATTTTGGATGTTGAATCCTCGCATGGTGATTCCTTCACAGAGGAACAAAATGAATTAGTGGAATCAGCAGCAGAGATGCTTTATGGTTTGATTCATGTCCGTTACATATTGACCAGCAAAGGACTGGCTGCAATGCTGGACAAGTACAAGGACTGTGACTTTGGTAGATGCCCAAGAGTTTACTGCTGCGGACAAGCCTGCCTTCCAGTAGGTTTATCAGACATTCCTCGATCAAGCACAGTAAATGTCTACTGTCCCAAATGCGAAGATATTTACTATCCTCGTTCCAAGTCCCAAGGTGACATTGATGGAGCCTATTTTGGAACCACATTTCCTCACCTGTTCTTGATGACATATGGGCACCTCAAACCACAAAAGGCATCTCAGAGCTATGTTCCTAGAGTATTTGGATTCAAGATGCACAAGCCTTAA 801 45.44 MYRERGVAAAGSKAEMASIDRKRINDALDKHLERSSPSTSKGLNGKDKDRVSAQSTLIEESETDTEESDVSGSDGDDASWISWFCHMRGHEFFCEVDDDYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDSFTEEQNELVESAAEMLYGLIHVRYILTSKGLAAMLDKYKDCDFGRCPRVYCCGQACLPVGLSDIPRSSTVNVYCPKCEDIYYPRSKSQGDIDGAYFGTTFPHLFLMTYGHLKPQKASQSYVPRVFGFKMHKP* 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5692457 5701159 + Vvi2g570 Vvi2g570 783269

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g570 266 SUPERFAMILY Casein kinase II beta subunit 77 265 IPR035991 GO:0005956|GO:0019887
Vvi2g570 266 Gene3D protein kinase ck2 holoenzyme, chain C, domain 1 72 176 IPR016149 GO:0005956|GO:0019887
Vvi2g570 266 Pfam Casein kinase II regulatory subunit 79 262 IPR000704 GO:0005956|GO:0019887
Vvi2g570 266 SMART CK_II_beta_2 79 262 IPR000704 GO:0005956|GO:0019887
Vvi2g570 266 PRINTS Casein kinase II regulatory subunit family signature 79 95 IPR000704 GO:0005956|GO:0019887
Vvi2g570 266 PRINTS Casein kinase II regulatory subunit family signature 96 110 IPR000704 GO:0005956|GO:0019887
Vvi2g570 266 PRINTS Casein kinase II regulatory subunit family signature 151 172 IPR000704 GO:0005956|GO:0019887
Vvi2g570 266 PRINTS Casein kinase II regulatory subunit family signature 176 197 IPR000704 GO:0005956|GO:0019887
Vvi2g570 266 PRINTS Casein kinase II regulatory subunit family signature 198 219 IPR000704 GO:0005956|GO:0019887
Vvi2g570 266 PRINTS Casein kinase II regulatory subunit family signature 226 243 IPR000704 GO:0005956|GO:0019887
Vvi2g570 266 PANTHER CASEIN KINASE II SUBUNIT BETA 58 265 - -
Vvi2g570 266 PANTHER CASEIN KINASE II SUBUNIT BETA 1 51 - -
Vvi2g570 266 MobiDBLite consensus disorder prediction 28 74 - -
Vvi2g570 266 Gene3D - 177 251 - -
Vvi2g570 266 PANTHER CASEIN KINASE II SUBUNIT BETA 58 265 IPR000704 GO:0005956|GO:0019887
Vvi2g570 266 PANTHER CASEIN KINASE II SUBUNIT BETA 1 51 IPR000704 GO:0005956|GO:0019887
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g570 K03115 CSNK2B; casein kinase II subunit beta - vvi:100262569 531.561
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi2g570 Vvi15g280 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g570 . . . . . . . . . . Cma02g01578 . Car02g01342 . . . Cpe05g00212 . . . . . . . . . . . . . . Cone8ag0436 Cone12ag0421 Cone6ag0629 Cone9ag0632 . . Chy04g00032 . . Blo19g00259 . . . . . . Sed01g4060 . Cmo19g00397 . . . . . . Bhi05g00570 Tan07g1906 Cmetu04g2898 . Hepe06g1721 . Lcy12g1882 Cla09g01203 Cam09g1270 Cec09g1284 Cco09g1318 . . Cre09g1230 . Csa03g04669 . Cme04g00042
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000972 4 4 2 2 3 2 4 2 2 2 2 2 3 2 2 3 2 6 4 2 2 3 2 2 2 2 2 10 2 2 84