Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g571 ATGAGGCACAGGGATTTTTGGGTTCCCTTGCATTCTAGGGAATTATCATTTTTTCAAAAAATATATATAAAAAAAAAAAGTAGATATAGGCGAATCATTGTTGAATTAGGTAATGTTTGGTTTAATAATTCAATTGGTTTTAATCGCAGTGGCGTCTCTTCCGATTACAACCCAACCCCACCACGATTTCCTCCTCCTCCAATTCAGTTTCAGACCCATTCGATACAACAGAGCAAAACTCATCTCCCCCCAAATCAGCCACAAGCTCACGCCCGAATCTCTTCTTCTCAATACCCGTCGAAGCAAACCCATCAACATCAAAGTCATCACCAAACCCAATTTCATGAGCATCCATCCACGCCCAAAACCATTCTTTCGCATCCCCACAAGAGGCCTATAATGACTCAAATGCCCTCTGCTCTTTCCCATTCCCCAACGCTGTCCTCTCTTAATCACAACCACCGCCATCACCACCAGCATCAGACACAATTGGATTCGCCGCTCCCATCTGCTTCTCAGTTGTTTGTTTGTACTTCTTTGGTCGCATTCGCAAAGGCATTGGCTTTCAAGCTCTTACACCATTTTCGCAATGCGGGTTCCTTGCGAATCCACTTGCGGGTTTTTATTTTACTTTCTCTGCCACCCCTTTACTTCTTCACTTGGAGCCCTCGCCGCTCGCTGGTGCTCGATTTCTTATCGGCGCTCGCTTTCTCGGCGGCTGTACTTTGTTCGTCGGCTTCTTCTGCGTCGAAACCTTCTCAACCCGTGCTTTGGTCTATTGGATCAAAGCCCAAATCGGAGAAGAGGACAAATTCGGGTTCTTGGGTGCAAGTGTATACCAATGGGGATGTGTATGAGGGTGAATTTCACAAAGGGAAGTGTTCAGGAAGTGGGGTTTATTATTATTATATGAGTGGGAGGTATGAGGGGGATTGGGTTGATGAGAAGTATGATGGGTATGGTGTTGAGACTTGGGCGAAAGGGAGTCGATTCCGGGGGCAATATAGGCAGGGTTTAAGACATGGGATTGGAGTGTATAGGTTTTACACTGGTGATGTTTATGCTGGAGAATGGTCGAATGGGCAGACTCATGGCTGCGGAGTTCACACTTGTGAGGATGGGAGCCGGTATGTGGGGGAGTTCAAGTGGGGTGTCAAACATGGGTTTGGTCATTACCATTTCAGAAATGGCGACATGTATGCTGGAGAATATTTTGCTGACAAGATGCATGGTTTTGGGGTATACCGATTTGCAAATGGACATCGATACGAGGGAGCCTGGCACGAGGGAAGAAGACAGGGGCTTGGTATGTATACTTTCAGAAATGGGGAGGCTCAGTCTGGTCACTGGCAAAATGGGGTTCTTGATGTTCCTAGCACTCAGAACACCCATCCTGCATCTCCTTTTGCTGTTAGCCATTCCAAAGTTCTGAATGCAGTCCAGGAGGCCCGACGTGCTGCTGAGAAAGCATTTGATGTCTCAAAAGTGGATGAGAGGGTGAACAAAGCCGTAGCATTGGCAAACAAAGCAGCTAACGCAGCAAGAGTTGCAGCTGTAAAGGCCGTACAAAAGAGAGTGCATCATAACAGTGACAGTAGTGACACACCATTACCAATTGTCTGA 1623 46.64 MRHRDFWVPLHSRELSFFQKIYIKKKSRYRRIIVELGNVWFNNSIGFNRSGVSSDYNPTPPRFPPPPIQFQTHSIQQSKTHLPPNQPQAHARISSSQYPSKQTHQHQSHHQTQFHEHPSTPKTILSHPHKRPIMTQMPSALSHSPTLSSLNHNHRHHHQHQTQLDSPLPSASQLFVCTSLVAFAKALAFKLLHHFRNAGSLRIHLRVFILLSLPPLYFFTWSPRRSLVLDFLSALAFSAAVLCSSASSASKPSQPVLWSIGSKPKSEKRTNSGSWVQVYTNGDVYEGEFHKGKCSGSGVYYYYMSGRYEGDWVDEKYDGYGVETWAKGSRFRGQYRQGLRHGIGVYRFYTGDVYAGEWSNGQTHGCGVHTCEDGSRYVGEFKWGVKHGFGHYHFRNGDMYAGEYFADKMHGFGVYRFANGHRYEGAWHEGRRQGLGMYTFRNGEAQSGHWQNGVLDVPSTQNTHPASPFAVSHSKVLNAVQEARRAAEKAFDVSKVDERVNKAVALANKAANAARVAAVKAVQKRVHHNSDSSDTPLPIV* 541
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5701865 5714378 + Vvi2g571 Vvi2g571 783270

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g571 540 SMART morn 375 396 IPR003409 -
Vvi2g571 540 SMART morn 329 350 IPR003409 -
Vvi2g571 540 SMART morn 398 419 IPR003409 -
Vvi2g571 540 SMART morn 306 327 IPR003409 -
Vvi2g571 540 SMART morn 283 304 IPR003409 -
Vvi2g571 540 SMART morn 352 373 IPR003409 -
Vvi2g571 540 SMART morn 421 442 IPR003409 -
Vvi2g571 540 MobiDBLite consensus disorder prediction 52 165 - -
Vvi2g571 540 Pfam MORN repeat 285 304 IPR003409 -
Vvi2g571 540 Pfam MORN repeat 308 330 IPR003409 -
Vvi2g571 540 Pfam MORN repeat 423 443 IPR003409 -
Vvi2g571 540 Pfam MORN repeat 377 399 IPR003409 -
Vvi2g571 540 Pfam MORN repeat 354 376 IPR003409 -
Vvi2g571 540 Pfam MORN repeat 331 353 IPR003409 -
Vvi2g571 540 Pfam MORN repeat 400 422 IPR003409 -
Vvi2g571 540 Gene3D - 406 476 - -
Vvi2g571 540 Gene3D - 266 314 - -
Vvi2g571 540 Gene3D - 315 359 - -
Vvi2g571 540 Gene3D - 360 405 - -
Vvi2g571 540 PANTHER - 242 530 - -
Vvi2g571 540 PANTHER - 108 244 - -
Vvi2g571 540 SUPERFAMILY Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 331 453 - -
Vvi2g571 540 PANTHER PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE RELATED 242 530 - -
Vvi2g571 540 PANTHER PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE RELATED 108 244 - -
Vvi2g571 540 MobiDBLite consensus disorder prediction 69 107 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g571 - - - vvi:100854975 887.871
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi2g571 Vvi15g279 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g571 . Blo03g00134 Bda06g01305 . . Bpe07g00201 . . Cmo06g00849 Cmo16g01146 . . . . Sed05g2359 Cpe14g00907 . Bhi11g00093 Tan01g2116 Cmetu06g0894 . Hepe06g1074 Mch10g1606 . Cla10g00203 Cam10g0209 Cec10g0214 Cco10g0215 Clacu10g0212 Cmu10g1055 Cre10g0463 . . Cone6ag0628 Cone9ag0631 Lsi07g01244 . . Cme06g02515 . . . . . . . Bma12g00195 . . Cmo19g00513 Cma06g00826 Cma16g01097 . Car16g01039 . . . . . . . . . . . . . . . . . Csa03g00218 Chy06g02102 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004356 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 2 2 43