Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g573 ATGCTAAAGAGTAGAAATCCTTGGGGCGGATCAGAGAAGGGGAATGCAGGAAAAGAGGACTGTAACTCCATTTTTGATGAGCTTCAGTTCCAGAAACCTGGTTGTGGTTCTCAGTCTGGTTCTGATCATGGCCTTCATCCTGAAGGCACGGTTTGGGACATTATTCCTGGTATTAGAAATAGTATGTACAGACATCAATGTGAAGGTTTTGAATTCATTTGGAAGAATGTGGCTGGAGGCATTTACCTTGATGAGTTGAAAAGATCATCCTTTTCTGATGGTGGTAGTGGCTGCATTATATCGCATGCTCCTGGTACAGGAAAGACCCGTTTAACCATAGTCTTTCTCCAGACATACATGGAGCTTTATCCTGCATGCAGGCCAGTCATCATTGCTCCTCGCACCATGCTCCTTACATGGGAAGAAGAATTCAAGAAATGGAATGTTGATATTCCATTTCATAATCTGAACAAGCTAGAGTACTCTGGAAAGGAAAATATAACTGCTTTGAATTTTCTGAGGAGGATTAGCCATCAGGGACAAAGTGCAAAATCTATTCGTATGGTAAAGTTGTATTCATGGAAAAAGGATCGAAGCATCCTGGGGATCAGCTACACACTATTTGAAAAACTTGCCGGAGAACGAGGGCACACACCTCGCAATGAACAAAACCAAAGTTTGCTGACAGGATCGCTAGGGAAATGGGATTTATTGACCAGTTCCATTGGCAAAATTGCCGATGATAAAGTAGAGGAACTAAGAGCCATGATCGAACCCTTTGTTCATATACACAAAGGCACAATACTTCAAGAAAATCTTCCAGGGTTGAAGGACTCTGTTGTTGTTTTACAACCATCTGATTTGCAGAGGAGGCTCCTTGAAAGCATTCGAGAAAAAAAGAACCCACTTGAACTGGGGTATTTAGTGTCCTTGATATCTGTACATCCCTCGCTGTTGCCCTCTGATGAAAGAAAACTGTTTTTTGACCAGACTAAGTTAGAAAAGATTAAATTGAATCCTGATATTGGTGTGAAAACAAAATTCCTGATGGCATTTATCAGGTTTAGTGAGACCATGAATGAGAAGGTTTTGGTCTTCAGTCAATTTTTAGATCCGTTGACCTATTTAATGGACCAACTTAAATATCATTTCCATTGGATTGTGGGAAAGGAGGTGTTGTACATGGATGGACAGCGTGATGTAAAGCAGCGCCAGTCCTCAATTAATACTTTCAACGATCCAGCCAGTCAAGTAAGGGTATTACTTGCATCAACAAAGGCTTGCTCTGAAGGGATCAGCCTGGTTGGTGCTTCTAGGGTCATTTTGCTTGATGTTGTTTGGAATCCATCAGTGGAAAGACAAGCTATAAGCAGGGCATACAGGCTTGGGCAGAGAAAAGTGGTGTACATATACCATCTGCTTACATCAGGGACAATGGAAGAGGAGAAGTACTGTCGACAGGCTAAGAAAGACCGACTATCTGAGTTGGTGTTTTCTTCTAAGGACAAGACTAGTGCTGGGAACAAAATTTCATCCACAGTTTCAGAAGATAAAATTTTGGAAGAGATGGTCCAGCACAACAAGTTGAAAGATATGTTTGATAAGATAATAAACCAACCAAAAGAATCAAATTTAATTGAAACTTTTGGTTTGGTGGATATCTAG 1665 40.9 MLKSRNPWGGSEKGNAGKEDCNSIFDELQFQKPGCGSQSGSDHGLHPEGTVWDIIPGIRNSMYRHQCEGFEFIWKNVAGGIYLDELKRSSFSDGGSGCIISHAPGTGKTRLTIVFLQTYMELYPACRPVIIAPRTMLLTWEEEFKKWNVDIPFHNLNKLEYSGKENITALNFLRRISHQGQSAKSIRMVKLYSWKKDRSILGISYTLFEKLAGERGHTPRNEQNQSLLTGSLGKWDLLTSSIGKIADDKVEELRAMIEPFVHIHKGTILQENLPGLKDSVVVLQPSDLQRRLLESIREKKNPLELGYLVSLISVHPSLLPSDERKLFFDQTKLEKIKLNPDIGVKTKFLMAFIRFSETMNEKVLVFSQFLDPLTYLMDQLKYHFHWIVGKEVLYMDGQRDVKQRQSSINTFNDPASQVRVLLASTKACSEGISLVGASRVILLDVVWNPSVERQAISRAYRLGQRKVVYIYHLLTSGTMEEEKYCRQAKKDRLSELVFSSKDKTSAGNKISSTVSEDKILEEMVQHNKLKDMFDKIINQPKESNLIETFGLVDI* 555
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5723376 5725314 - Vvi2g573 Vvi2g573 783272

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g573 554 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 229 550 IPR044567 GO:0080188
Vvi2g573 554 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 5 224 IPR044567 GO:0080188
Vvi2g573 554 Gene3D - 45 231 IPR038718 -
Vvi2g573 554 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 4 5 224 - -
Vvi2g573 554 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 4 229 550 - -
Vvi2g573 554 Pfam Helicase conserved C-terminal domain 348 463 IPR001650 -
Vvi2g573 554 CDD SF2_C_SNF 341 474 - -
Vvi2g573 554 Pfam SNF2-related domain 94 168 IPR000330 GO:0005524|GO:0140658
Vvi2g573 554 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 267 499 IPR027417 -
Vvi2g573 554 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 348 504 IPR001650 -
Vvi2g573 554 Gene3D - 274 547 IPR027417 -
Vvi2g573 554 SMART helicmild6 378 463 IPR001650 -
Vvi2g573 554 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 52 180 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g573 K10875 RAD54L, RAD54; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-] - csin:114301821 667.151
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g573 . . . . . . . . . . Cma02g01579 . Car02g01343 . . . Cpe05g00211 . . . . . . . . . . . . . . Cone8ag0437 Cone12ag0422 . . . . Chy04g00035 . . . Bda07g00129 Bda09g00688 Bpe08g00872 Bpe11g00360 . . Sed01g4061 Cmo02g01621 Cmo19g00395 . . . . . . Bhi05g00566 Tan07g1908 Cmetu04g1824 Lac11g2350 Hepe06g1725 . . Cla09g01200 Cam09g1268 Cec09g1282 Cco09g1316 . . Cre09g1228 . Csa03g04668 . Cme04g00044
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005251 3 2 0 2 2 1 1 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 3 1 1 1 2 1 1 40