Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g580 ATGCTGGAGGATCAGGTGGCCTCGCTCTTGCAGAGGTATTTGGGGGACTATGTCATAGGTCTCAACAAAGAAGCTCTCAAAATCAGTGTCTGGCAAGGAGATGTAGAGCTCACAAATATGCAGTTGAAGCCGGAGGCACTCAATGCATTGAAATTGCCAGTAAAGGTTAAGGCAGGATTTCTTGGATCAGTGAAGCTTAAGGTTCCATGGAGCAGGCTTGGCCAAGATCCAGTTTTAGTTTACCTGGATCGGATTTTTTTATTAGCTGAACCCGCAACTCAAGTTGAAGGATTTACAGAAGATGCTATTCAGGAAGCTAAAAGAAGCCGAGTGCGGGAAATGGAAACAAGGCTATTGGAGAGGACACGTCAATTAAAGTCAGAGATGAATAAATCATGGCTGGGATCCTTGGTCGATACTATAATTGGAAACCTGAAGCTTTCTATTTCGAACATTCACATCAGATATGAGGATCTTGAGAGCAATCCTGGTCACCCATTTGCAGCTGGTGTAACCTTGGAGAAACTTTCAGCCGTTACAATTGATGATAGTGGGAAGGAAACTTTTGTTACAGGAGGTGCACTGGAGTGTATTCAGAAGTCTGTGGAACTTGAACGACTTGCTTGTTATTTGGATTCTGATATTTATCCGTGGCATGTTGACAAACCGTGGGAGGATTTGCTTCCTTGGGAATGGGTTCAGGTTTTCAAATTTGGTACTAAGGATGGAAAACCAGCTGATCATGTGATAAAAAAGCACACCTACATTCTGCAACCCATTACTGGGAATGCGAAGTACTCAAAACTGCGGTCCAGTGAATCTGCTAACAGAGGTCAACCATTACAGAAAGCATCAGTGAATTTGGATGATGTGACACTCTGTTTGCCAAAGGATGGCTATAGGGATATTTTAAAATTAGCTGATAACTTTGCTTCTTTTAACCAACGCTTGAAAAATGCTCATTACCGGCCACTCGTGTTGGTGAAATCTGATCCAAGGTCCTGGTGGAAGTATGCCTATAGAGCTGTTTCTGATCAAATGAAGAAGGCAAGTGGCAGATTGTCATGGGAGCAGGTCCTGAAGTATGCATACTTACGTAAGAAATATATATCTCTTTATGCTTCGCTTCTCAAATCTGATCTAAGTCGGGCCATAGTTGATGATAACAAAGACATTGAGGAAATAGATCGTGGACTTGATATTGAACTAATACTTCAGTGGAGGATGTTGGCTCACAAGTTTGTGGAGCAGTCAGCAGAATCGAGCCTATACTTGAGAAAACAAAAAGAAAAGAAATCATGGTGGTCATTTGGATGGAGTGGTCAATCCCTTAAGGACGAAAATGAAAGTGAACCATTGCGTTTCAGTGAGGAAGACTGGGAACAATTAAACAAAATCATAGGATACAGGGAAGGGGAAGATGGGCAGTCTCTGATAACCCATGACCAAGGTGATGTTCTTCATACTTCCTTGGAGGTTCACATGAACCATAATGCTTCAAAGCTTATGGGTGATGCTCAGGAGTGTCTCGCTGAGTTGTCCTGTGAAAGCCTTGATTGTTCCATAAGGCTCTATTCAGAGGCAAAAGTTTTTGACATGAAATTGGGATCATATCGGTTGTCATCACCAAATGGTCTCCTTGCTGAGAGTGCAACTGCTTATGATTCTTTGGTTGGTGTCTTCCGCTATAAGCCTTTTGATGCTAAAGTGGACTGGAGCATTGTTGCTAAAGCTTCTCCTTGTTACATGACTTATCTAAAGGAGTCAATTGATCAAATTATCGATTTCTTTGGAAGCAATACTGCTGTTAGTCAGACTATAGCTGTGGAAACTGCAGCGGCGGTACAGATGACAATTGATGGTGTTAAGCGCACTGCTCAGCAACAAGTGAATAAAGCATTGAAGGATCATTCCAGGTTTTTGTTGGATTTGGATATTGCAGCTCCTAAGATCATTATTCCTACCGATTTCCGTCCGGACAACAATAATTCAACAAAACTTTTCCTTGACTTGGGAAATCTGGTGATTCGGACAGAGGATGATTCTGAATGGGGTTCACCCGAGGAGATGTACATGTACTTACAATTCAATTTGGTTTTGAGTGATGTATCTGCTTGCTTGGTGGATGGCGACTACCTTTGGAGTCAAACACATTTAAACAGTGTTGATGACTCTTCTCACTTAAGTGGTGTTACTTTCTGGCCTGTTATTGATAAGTGTGGGGTAATCCTAAAGCTTCAACAGATCCGACTAGAGAACCCATCCTACCCTTCAACAAGACTTGCTGTGCGAATGCCATCATTAGGATTCCATTTTTCACCAGCTCGGTATCATCGATTGATGCAAGTAGCAAAGATCTTTGAGGAGGAAGATGGCAAGAAGTCAGATCTTCTTCGCCCTTGGAATCAAGCTGATTTTGAGGGGTGGTTGTCTCATCTTATATGGAAGGGTGTGGGAAATAGGGAAGCTGTATGGCAGCGGAGGTACTTCTGTCTTGTTGGGCCTTTTCTTTATGCCCTTGAAAGCCCTGGCTCTAAATCCTACAAGCACTATATCAGCTTACGAGGAAAACAACTATATCTTGTTCCTCCAGAGTTTGTTGGTAATGTGGAACATGTATTGGCTATTTGTGATGCGGCACGATCCAATAGCAAGGTTGTGGAAGATGCAAATGCCCTAATACTACGTTGTGATTCTGATGATTCAAGGAAAACTTGGCAAAGTCGCTTACAGGGGGCTATTTATCGTGCATCGGGTTCTGCGCCTATCACAAGTCTATCGGAAACTTCATCAGATCCTGAAGACTCAGACATTGACAACAATAATGTAATGGATATGTCAATGATAGAGAGTGTTTTTATCACTGGAGTTCTTGATGAACTAAAAGTCTGCTTTAATTATAATTCTCTGCATGATCAAAATTACGTGGAGGTACTTCTAGCTGAAGAGAGCCGTTTATTTGAATTCCGAGCAATAGGTGGTCAGGTGGAGCTTTCAATTAGAGCAAATGACATGTTCATTGGAACCCTTCTGAAATCTTTGGAGATTGAAGATTTAGTTTGTGGCAAGGGAGTGTCTCAGCCTTGTTATCTGGCAAGATCATTCATCGGGAGCCCCCCTAGTTTTAGTCGTGTTGCTGGTCTACTTCCTGCTGAGGCCCTTCAAACTAGGAGGGACATAGATCTTACTGACGCATTAGATAGTTTTGTGAAAGCTCAAATAATTATTTATGACCGGAACACTCCTTTGTATAATAATGTTGATAAGCAGGTAATTGTGACACTTGCTACATTGTCATTTTTCTGTCGTAGACCAACGGTTCTTGCCATCATGGAATTTGTTGATGCTATTAACGCTAAGGATGAAGCATGTGAATCTTTTAGTGACAATTCCCCTATTGTGCAAAGAGGAGTCTTGGAGGAGGAGATGGATGATAATCAATTGATGGTTGAGGAGCCTGTTGTCAAAGGTTTGCTAGGAAAGGGGAAATCCAGAATCATTTTCTATTTAACATTGAATATGGCTCGTGCTCAGATCCTGTTGATGAATGAAAATGAAACTAAGCTAGCTAGTCTGTCACAGGATAATCTGCTTACCGATATTAAGGTGTTTCCATCATCTTTTAGTATAAAGGCAGCTCTCGGAAATGTAAGGATCAGTGATGACAGTCTTCATAGCAGCCATATTTTTTTCTGGATTTGTGATATGAGAAATCCTGGGGGGAGTTCGTTTGTTGAGTTGGTCTTTAGTTCATTCAGTGCTGATGATGAAGATTATGAGGGTTATGATTATAGCCTATTTGGACAGCTTTCAGAAGTGCGTCTTGTCTATTTGAATCGTTTTGTCCAGGAGGTTGTTAGTTACTTTGTGGGTCTTGTTCCCAACAATTCAAAGGGTGTCGTGAAATTAAGAGATCAAGTAACAAATTCAGAGAAGTGGTTTACTACAAGTGAGATTGAAGGTTCACCCGCTGTGAAGTTGGATCTTTCACTTAGAAAGCCTATAATATTAATGCCTCGGAGAACAGACAGCCTTGATTACTTGAAGCTTGATGTCGTTCATATAACCATCCAGAACACCTTTCAATGGTTTCATGGCAGTAAAAACGAAATTAATGCTGTTCATTTGGAAATTTTGACAGTTCTGGTTGAGGACATCAATTTAAATGTTGGTACTGGCAAAGAATTAGGTGAAAGTATAATACAAGATGTGAAAGGGGTTTCTGTTGTGATCCGGAGGTCTCTTCGAGACCTGTTGCATCAGATACCAAGTACTGAAGCTGTCATTAAGATAGAGGAACTGAAAGCTGCTCTATCAAACAGAGAATACCAGATAATTACTGAATGTGCATCGTCTAATGTCTCGGAGACCCCAAATATTGTGCCCCCACTGAATAATGATTCTGTGACACCTTCAGTTGATGCAGCTGAACCTCTAGCTTCTCAGGATCCTGATGCTGCTGAAAATGGAACTCAAAATGGAGAGAGCTGGATTGCTTTGAAAGTTTCTGTCTTTGTTAATCTCGTTGAGTTATGCTTACATGCAGGGATAGCAAGAGATACGTCTCTGGCCACTGTGCAGGTATTCACCTGTTGTAGGTTTTTTCCTTGCTAG 4614 41.46 MLEDQVASLLQRYLGDYVIGLNKEALKISVWQGDVELTNMQLKPEALNALKLPVKVKAGFLGSVKLKVPWSRLGQDPVLVYLDRIFLLAEPATQVEGFTEDAIQEAKRSRVREMETRLLERTRQLKSEMNKSWLGSLVDTIIGNLKLSISNIHIRYEDLESNPGHPFAAGVTLEKLSAVTIDDSGKETFVTGGALECIQKSVELERLACYLDSDIYPWHVDKPWEDLLPWEWVQVFKFGTKDGKPADHVIKKHTYILQPITGNAKYSKLRSSESANRGQPLQKASVNLDDVTLCLPKDGYRDILKLADNFASFNQRLKNAHYRPLVLVKSDPRSWWKYAYRAVSDQMKKASGRLSWEQVLKYAYLRKKYISLYASLLKSDLSRAIVDDNKDIEEIDRGLDIELILQWRMLAHKFVEQSAESSLYLRKQKEKKSWWSFGWSGQSLKDENESEPLRFSEEDWEQLNKIIGYREGEDGQSLITHDQGDVLHTSLEVHMNHNASKLMGDAQECLAELSCESLDCSIRLYSEAKVFDMKLGSYRLSSPNGLLAESATAYDSLVGVFRYKPFDAKVDWSIVAKASPCYMTYLKESIDQIIDFFGSNTAVSQTIAVETAAAVQMTIDGVKRTAQQQVNKALKDHSRFLLDLDIAAPKIIIPTDFRPDNNNSTKLFLDLGNLVIRTEDDSEWGSPEEMYMYLQFNLVLSDVSACLVDGDYLWSQTHLNSVDDSSHLSGVTFWPVIDKCGVILKLQQIRLENPSYPSTRLAVRMPSLGFHFSPARYHRLMQVAKIFEEEDGKKSDLLRPWNQADFEGWLSHLIWKGVGNREAVWQRRYFCLVGPFLYALESPGSKSYKHYISLRGKQLYLVPPEFVGNVEHVLAICDAARSNSKVVEDANALILRCDSDDSRKTWQSRLQGAIYRASGSAPITSLSETSSDPEDSDIDNNNVMDMSMIESVFITGVLDELKVCFNYNSLHDQNYVEVLLAEESRLFEFRAIGGQVELSIRANDMFIGTLLKSLEIEDLVCGKGVSQPCYLARSFIGSPPSFSRVAGLLPAEALQTRRDIDLTDALDSFVKAQIIIYDRNTPLYNNVDKQVIVTLATLSFFCRRPTVLAIMEFVDAINAKDEACESFSDNSPIVQRGVLEEEMDDNQLMVEEPVVKGLLGKGKSRIIFYLTLNMARAQILLMNENETKLASLSQDNLLTDIKVFPSSFSIKAALGNVRISDDSLHSSHIFFWICDMRNPGGSSFVELVFSSFSADDEDYEGYDYSLFGQLSEVRLVYLNRFVQEVVSYFVGLVPNNSKGVVKLRDQVTNSEKWFTTSEIEGSPAVKLDLSLRKPIILMPRRTDSLDYLKLDVVHITIQNTFQWFHGSKNEINAVHLEILTVLVEDINLNVGTGKELGESIIQDVKGVSVVIRRSLRDLLHQIPSTEAVIKIEELKAALSNREYQIITECASSNVSETPNIVPPLNNDSVTPSVDAAEPLASQDPDAAENGTQNGESWIALKVSVFVNLVELCLHAGIARDTSLATVQVFTCCRFFPC* 1538
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5915694 5997069 - Vvi2g580 Vvi2g580 783279

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g580 1537 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN-RELATED 66 1036 - -
Vvi2g580 1537 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN-RELATED 1039 1529 - -
Vvi2g580 1537 SUPERFAMILY PH domain-like 797 919 - -
Vvi2g580 1537 SMART PH_update 804 917 IPR001849 -
Vvi2g580 1537 Pfam N-terminal region of Chorein or VPS13 2 108 IPR026854 -
Vvi2g580 1537 Pfam PH domain 806 914 IPR001849 -
Vvi2g580 1537 Pfam Repeating coiled region of VPS13 562 784 IPR031642 -
Vvi2g580 1537 Gene3D - 801 919 IPR011993 -
Vvi2g580 1537 ProSiteProfiles PH domain profile. 803 915 IPR001849 -
Vvi2g580 1537 PANTHER - 66 1036 - -
Vvi2g580 1537 PANTHER - 1039 1529 - -
Vvi2g580 1537 Pfam Vacuolar sorting-associated protein 13, N-terminal 133 374 IPR031646 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g580 K19525 VPS13A_C; vacuolar protein sorting-associated protein 13A/C - pxb:103953409 2263.8
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g580 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo03g00822 . . . . . . . . . Cmo19g00389 . . . . . . . . . . . . . Cla09g01190 Cam09g1256 Cec09g1271 . . . Cre09g1218 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006969 1 2 4 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 2 37