Cucurbitales platform

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi2g599	ATGGATTCACAACCCAACAACCTCTACGACACCGCTTCCCAACCCGACACTGGCAACGACGCCTACACGTTCATCGAATTCAACACTCAAGGCGAGGACTTTGACTACCCTGACTTCCGCGACCCGATTCGCCCCTCCGCCTGGCCCACGCCTTCCGATTCGATATCCGACGCAGCTGACCACCAGTCCGATGCTTCTCCTGTCTCCGCCGCCCCCGGCAGCGCCACCAAGGCCCGCGGCGCCGCCGGCAGCAGCAGCAGCAGCCAGGCAGCCGTGGACGCCTTGGCTGCGGGAATGAGCGGATTAAACTTTGAGGAGACTGGGGATGATGATAATTATGAGTACGGAAAAGGGGATTTCACGGAGCACGCGTGCAGGTATTGCGGAGTTCAGAATCCTGCGTGCGTCGTGCGGTGTAATGTGCCGTCGTGCCGCAAGTGGTTTTGTAATTCACGCGGGAATACGTCCGGTTCGCATATTGTGAATCACCTGGTTCGAGCCAAACACAAGGAAGTTTGTCTTCATAAAGATAGTCCTCTTGGAGAAACAATCCTTGAATGCTACAACTGTGGATGCCGAAATGTGTTTCTTCTTGGATTTATATCTGCCAAGACAGAAAGTGTTGTTGTTCTGCTTTGTAGAGAACCTTGCCTGAGTGTTAATGCATTGAAGGACATGAACTGGGACCTGAGTCAGTGGTGCCCTCTTATTGATGATAGGTGTTTCTTGCAGTGGCTTGTTAAGATCCCATCCGAACAGGAGCAATTGAGGGCACGGCAAATCAGTGCCCAACAAATAAATAAGGTAGAAGAACTTTGGAAGACAAATCCTGATGCTTCCCTGGAAGATCTTGAGAAGCCTGGTGTGGATGATGAACCCCAGCCCATAGCCTTGAAATATGAAGATGCATATCAGTATCAAAATGTATTTGCACCACTTATCAAGCTTGAGGCAGACTATGATAAAATGATGAAAGAATCTCAAAGCAAAGACAACGTTACAATTCGCTGGGATATTGGTCTTAACAAGAAGCGTATTGCATATTTCGTTTTTCCAAAGGAAGACAATGAGTTGCGTCTTGTACCTGGTGATGAGTTGCGGCTGCGTTATTCAGGAGATGCAGCTCATCCAGCATGGCAGTCGGTTGGGCATGTGATCAAGCTAACTGCACAAGAGGAGGTTGCACTTGAGCTTCGTGCCAGTCAGGGAGTTCCTGTTGATGTGAATCATGGTTTCAGTGTTGACTTTGTGTGGAAGAGTACAAGCTTTGATCGGATGCAGGGGGCCATGAAAACTTTTGCAGTGGATGAAACTAGTGTCAGTGGATACATTTACCATCACTTGTTGGGTCATGAAGTTGAGGTTCAGATGGTTCGAAATACGCTCCCTCGTCGATTTGGCGCACCAGGCCTTCCAGAGCTCAATGCTTCTCAAGTTTTTGCTGTAAAGAGTGTACTTCAAAAGCCAATAAGTTTGATTCAAGGTCCACCTGGCACTGGGAAAACTGTAACTTCAGCAGCAATTGTATATCACATGGCTAAACAAGGCCAGGGGCAGGTTTTGGTTTGTGCTCCAAGTAATGTGGCTGTAGACCAACTAGCTGAAAAGATAAGTGCCACTGGGTTAAAGGTCGTTAGGCTCTGTGCAAAATCGAGGGAAGCTGTTAGTTCTCCTGTTGAGCATTTAACCCTTCATTATCAGGTTCGACATCTTGATACGTCGGAAAAGAGTGAGCTTCATAAGCTACAGCAACTGAAGGATGAACAAGGGGAGTTGTCTAGCAGTGATGAGAAAAAATACAAAGCTCTGAAGCGGGCGACCGAGAGGGAGATATCTCAAAGTGCTGATGTCATTTGTTGCACATGTGTTGGTGCTGGGGATCCTCGGTTGGCCAATTTTAGATTCCGTCAGGTGCTTATTGATGAGTCTACTCAGGCTACTGAACCTGAGTGCCTCATTCCTTTGGTTCTTGGTGTGAAGCAGGTTGTCCTTGTTGGTGACCATTGCCAGCTTGGTCCAGTCATCATGTGTAAGAAAGCTGCACGGGCTGGGCTAGCTCAGTCTCTGTTTGAGCGTCTTGTGCTTCTGGGTGTGAAACCAATTAGATTGCAGGTTCAATACCGTATGCACCCATCCCTGTCAGAATTTCCTTCCAATAGCTTCTATGAAGGTACACTCCAAAATGGAGTGACCATCAATGAAAGGCAATCGTCTGGCATTGATTTTCCTTGGCCTGTGCCAAATCGACCTATGTTCTTTTATGTCCAGATGGGACAAGAGGAGATCAGTGCTAGCGGAACATCCTATCTGAATAGGACTGAAGCTGCAAATGTTGAAAAAATTGTAACTACTTTTTTAAGAAGTGGTGTAGTTCCCAGTCAGATTGGGGTGATAACACCATATGAGGGACAGAGAGCATATATTGTGAATTATATGTCGAGAAATGGTGCTTTAAGGCAACAACTTTATAAAGAAATTGAGGTTGCGAGTGTAGATTCATTCCAGGGAAGGGAAAAAGATTACATTATTTTGTCTTGTGTGAGGAGTAATGAGCATCAGGGCATTGGGTTCCTTAATGATCCTCGCAGGCTTAATGTTGCACTAACACGTGCTCGTTATGGTATTGTCATCCTGGGAAATCCTAAAGTTCTTAGTAAACAGCCGCTATGGAATAGCTTGTTGACACACTACAAGGAGCATGAGTGCTTGGTTGAAGGTCCTCTGAATAACCTGAAGCAGAGTATGGTTCAATTTCAAAAGCCAAAAAAGATCTACAATGATCGTCGACTTTTCTTCGGAGGTGGCCCTGGGATAGTGCCTAATGACAATTTTGGAACTGTTACTTCGTCAAGCCCCAGTGCTGATAGAAGAAGCAGTCGTGGCAGGGGTTCATATATGCCATCTGGCCCACCCAATGGTACTCATAAACCTGGAGTGCATCCGGCTGGGTTCCCAATGCCTCGTGTCCCCCTTCCTCCATTTCATGGTGGTCCCCCATCTCAACCCTATGCCATTCCAACTCGTGGAGCTGTACATGGACCTGTTGGAGCTGTTCCTCATGTCCCTCCACCAGGAAGCCGGGGGTTTGGTGCTGGGCGTGGCAATGCTGGTGCTCCTATTGGCAGTCATCTTCCACACCAGCAAGGTTCTCAGCAAGCTGTTGGGAATCTTGGCTCTACTTTTAACTTTCCTGCTCTGGAGAATCCAAATAGCCAGCCATCCGTGGGTGGTCCATTATCTCAACCCGGATTTGTTACTAATATGCCAGTACAAGGTCCGAGCCAAACATTTCGTGATGGATTTTCTATTGGGGGCATGTCGCAGGATTTCTTGGGTGATGATTTTAAAAGCCAGGGTTCACATGTACCTTATAATGTTGCAGACTTCTCCACACAGGCTTCTCAAAGTGGGTATACCCTTGATTATGCTACACAAGGAGCGCAGGCTGGGTTTCCAGGAAGTTTCCTAAACCAGAACTCTCAAGCTGGATATACTCGATTTGGTACTGGAAATGATTTCATGTCTCAGGACTACATGGCTCACGGATCACAAGGTCTGTTTACACAGGTTGGCTTCAATGACCCATCCCAAGATGATGCCTCCCAGAGCCATTTTGGTGTGGCCAATCCCAACCCCCTTCAATCGCAGGGTTTGATGAATCCTCTCTACTCCCAACCCTTTGCCCATTACAACACACAGCCACTAAATTTGCAGGCTCCACAGCAGCAGCAGCAACAGCAACAGCAAACACCTCCCCAGCAGGGCCAGAGCTCCCAAAACCAGAAACTCCACTACAATGGTTGA	3804	47.53	MDSQPNNLYDTASQPDTGNDAYTFIEFNTQGEDFDYPDFRDPIRPSAWPTPSDSISDAADHQSDASPVSAAPGSATKARGAAGSSSSSQAAVDALAAGMSGLNFEETGDDDNYEYGKGDFTEHACRYCGVQNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLSVNALKDMNWDLSQWCPLIDDRCFLQWLVKIPSEQEQLRARQISAQQINKVEELWKTNPDASLEDLEKPGVDDEPQPIALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNVTIRWDIGLNKKRIAYFVFPKEDNELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALELRASQGVPVDVNHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEVQMVRNTLPRRFGAPGLPELNASQVFAVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPECLIPLVLGVKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNSLLTHYKEHECLVEGPLNNLKQSMVQFQKPKKIYNDRRLFFGGGPGIVPNDNFGTVTSSSPSADRRSSRGRGSYMPSGPPNGTHKPGVHPAGFPMPRVPLPPFHGGPPSQPYAIPTRGAVHGPVGAVPHVPPPGSRGFGAGRGNAGAPIGSHLPHQQGSQQAVGNLGSTFNFPALENPNSQPSVGGPLSQPGFVTNMPVQGPSQTFRDGFSIGGMSQDFLGDDFKSQGSHVPYNVADFSTQASQSGYTLDYATQGAQAGFPGSFLNQNSQAGYTRFGTGNDFMSQDYMAHGSQGLFTQVGFNDPSQDDASQSHFGVANPNPLQSQGLMNPLYSQPFAHYNTQPLNLQAPQQQQQQQQQTPPQQGQSSQNQKLHYNG*	1268

Gff information

Chromosome	Start	End	Strand	Old_gene	Gene	Num
2	6287438	6318076	-	Vvi2g599	Vvi2g599	783298

Annotation

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Vvi2g599	1267	Gene3D	-	437	707	IPR027417	-
Vvi2g599	1267	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	470	903	IPR027417	-
Vvi2g599	1267	MobiDBLite	consensus disorder prediction	1	26	-	-
Vvi2g599	1267	MobiDBLite	consensus disorder prediction	49	70	-	-
Vvi2g599	1267	CDD	SF1_C_Upf1	709	898	IPR041679	-
Vvi2g599	1267	Gene3D	-	559	611	-	-
Vvi2g599	1267	MobiDBLite	consensus disorder prediction	1027	1052	-	-
Vvi2g599	1267	MobiDBLite	consensus disorder prediction	1	86	-	-
Vvi2g599	1267	CDD	ZBD_UPF1-like	124	246	IPR018999	GO:0000184\|GO:0003723\|GO:0003724\|GO:0005524\|GO:0005737\|GO:0008270
Vvi2g599	1267	MobiDBLite	consensus disorder prediction	941	987	-	-
Vvi2g599	1267	PANTHER	DNA2/NAM7 HELICASE FAMILY	99	1004	IPR045055	-
Vvi2g599	1267	Pfam	RNA helicase UPF1, 1B domain	328	417	IPR040812	-
Vvi2g599	1267	Pfam	RNA helicase (UPF2 interacting domain)	123	276	IPR018999	GO:0000184\|GO:0003723\|GO:0003724\|GO:0005524\|GO:0005737\|GO:0008270
Vvi2g599	1267	Gene3D	-	329	417	-	-
Vvi2g599	1267	CDD	DEXXQc_UPF1	473	708	-	-
Vvi2g599	1267	MobiDBLite	consensus disorder prediction	942	958	-	-
Vvi2g599	1267	CDD	1B_UPF1-like	329	416	IPR040812	-
Vvi2g599	1267	PANTHER	REGULATOR OF NONSENSE TRANSCRIPTS 1-LIKE PROTEIN	99	1004	-	-
Vvi2g599	1267	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	482	614	IPR014001	-
Vvi2g599	1267	Pfam	Type III restriction enzyme, res subunit	477	552	IPR006935	GO:0003677\|GO:0005524\|GO:0016787
Vvi2g599	1267	Pfam	AAA domain	686	881	IPR041679	-
Vvi2g599	1267	Pfam	AAA domain	576	676	IPR041677	GO:0004386
Vvi2g599	1267	Coils	Coil	1265	1267	-	-
Vvi2g599	1267	Gene3D	-	708	919	IPR027417	-
Vvi2g599	1267	MobiDBLite	consensus disorder prediction	1190	1267	-	-

Pathway

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi2g599	K14326	UPF1, RENT1; regulator of nonsense transcripts 1 [EC:3.6.4.13 5.6.2.3]	-	vvi:100264343	2437.53

Deco-Alignment

Select	Vvi1	Blo1	Blo2	Bda1	Bda2	Bpe1	Bpe2	Bma1	Bma2	Cmo1	Cmo2	Cma1	Cma2	Car1	Car2	Sed1	Cpe1	Cpe2	Bhi1	Tan1	Cmetu1	Lac1	Hepe1	Mch1	Lcy1	Cla1	Cam1	Cec1	Cco1	Clacu1	Cmu1	Cre1	Cone1	Cone2	Cone3	Cone4	Lsi1	Csa1	Chy1	Cme1	Blo3	Blo4	Bda3	Bda4	Bpe3	Bpe4	Bma3	Bma4	Sed2	Cmo3	Cmo4	Cma3	Cma4	Car3	Car4	Cpe3	Cpe4	Bhi2	Tan2	Cmetu2	Lac2	Hepe2	Mch2	Lcy2	Cla2	Cam2	Cec2	Cco2	Clacu2	Cmu2	Cre2	Lsi2	Csa2	Chy2	Cme2
	Vvi2g599	.	.	.	.	.	.	Bma07g00979	Bma14g00130	Cmo06g00686	Cmo16g01137	.	.	.	.	.	Cpe14g00898	.	Bhi11g00106	.	.	.	.	Mch10g1617	.	Cla10g00190	Cam10g0195	Cec10g0201	Cco10g0202	Clacu10g0199	Cmu10g1044	Cre10g0450	Cone8ag0446	Cone12ag0435	.	.	Lsi07g01234	.	.	Cme06g02503	Blo03g00825	Blo19g00160	Bda07g00115	Bda09g00693	Bpe08g00863	Bpe11g00354	.	.	.	.	.	Cma06g00659	Cma16g01087	.	Car16g01029	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Csa03g00208	Chy06g02112	.

Syn-Orthogroups

Select	Orthogroup	Bda	Bhi	Blo	Bma	Bpe	Cam	Car	Cco	Cec	Chy	Cla	Clacu	Cma	Cme	Cmetu	Cmo	Cmu	Cone	Cpe	Cre	Csa	HCH	Hepe	Lac	Lcy	Lsi	Mch	Sed	Tan	Vvi	Total
	OG0004846	3	2	2	2	2	1	2	1	1	1	1	1	2	1	0	2	1	2	1	1	1	1	1	1	1	1	1	2	1	1	40