Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g6 ATGGCAACACCAGATGAAAGTTCTTCTGCTAAGAAGTGGCTTCCTCTCGAAGCTAACCCCGATGTTATGAACCAGTTCCTTTGGGGTCTTGGGCTTTTGGAAGATGAAGCAGAGTGTTATGATGTTTATGGTCTGGATGAAGAACTCTTAGCAATTGTTCCAAAGCCTGTCCTTGCTGTGCTGTTTCTTTATCCCATTACTACACAGAGTGAAGAGGAGAGAATCCTGCAGGATAGTACAAAAAGGGAGACTAGCAATAAAGTTTACTTCATGAGACAAACTGTGGGGAATGCTTGTGGAACAATTGGACTTCTCCATGCTATTGGGAATGTCACTTCAGAGATTAAGCTTGTTGAGGGATCGTTCTTGAATAGGTTTTTCAAATCCACTGCAAGCATGGACCCACTAGAGCGTGCAGCATACCTTGAGAATGACCAAGAAATGGAAGTTTCTCATTCGGTAGCAGCTACTGCTGGTGATACAGAGGCTTCAACTAATGCGGATGCTCATTTTATCTGCTTCTCATGTGTGGATGGAGAACTTTATGAACTTGATGGACGGAAGTCAGGAGCAGTATCACATGGTCCATCCTCGCCCAGTACCTTATTGCAGGATGCAGCCAAGGTCATACAGGGTATAATCCAAAAAAATCCTGACTCGATCAACTTCAATGTCATCGCAATTTCAAAGAAACTTGAGGGACCCTACTAA 711 43.6 MATPDESSSAKKWLPLEANPDVMNQFLWGLGLLEDEAECYDVYGLDEELLAIVPKPVLAVLFLYPITTQSEEERILQDSTKRETSNKVYFMRQTVGNACGTIGLLHAIGNVTSEIKLVEGSFLNRFFKSTASMDPLERAAYLENDQEMEVSHSVAATAGDTEASTNADAHFICFSCVDGELYELDGRKSGAVSHGPSSPSTLLQDAAKVIQGIIQKNPDSINFNVIAISKKLEGPY* 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 125072 140057 + Vvi2g6 Vvi2g6 782705

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g6 236 Pfam Ubiquitin carboxyl-terminal hydrolase, family 1 13 214 IPR001578 GO:0004843|GO:0006511
Vvi2g6 236 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 8 233 - -
Vvi2g6 236 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 8 233 IPR001578 GO:0004843|GO:0006511
Vvi2g6 236 CDD Peptidase_C12_UCH_L1_L3 13 228 - -
Vvi2g6 236 SUPERFAMILY Cysteine proteinases 11 231 IPR038765 -
Vvi2g6 236 PRINTS Ubiquitin C-terminal hydrolase (C12) family signature 15 32 IPR001578 GO:0004843|GO:0006511
Vvi2g6 236 PRINTS Ubiquitin C-terminal hydrolase (C12) family signature 53 65 IPR001578 GO:0004843|GO:0006511
Vvi2g6 236 PRINTS Ubiquitin C-terminal hydrolase (C12) family signature 93 110 IPR001578 GO:0004843|GO:0006511
Vvi2g6 236 PRINTS Ubiquitin C-terminal hydrolase (C12) family signature 165 176 IPR001578 GO:0004843|GO:0006511
Vvi2g6 236 PRINTS Ubiquitin C-terminal hydrolase (C12) family signature 181 191 IPR001578 GO:0004843|GO:0006511
Vvi2g6 236 Gene3D - 7 231 IPR036959 GO:0004843|GO:0006511
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g6 K05609 UCHL3, YUH1; ubiquitin carboxyl-terminal hydrolase L3 [EC:3.4.19.12] - vvi:100244786 471.085
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g6 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0421 Cone12ag0406 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .