Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g603 ATGGCGTCTCTGTCTTTGTCCGCTCCTTCTTACCATGCCGAATCGCTGGTTTCTCGCTACTCGCTCCGCCAGTCCAGCTTTCTCCCCAACGAGTCCCGTTATCGTTTCCAAGTCGCAAGCGTCATCAAATGTGACATGAATGAATCGTTGAAGTTTGAAAATGGGAAGCCTTGTGTTCCTGTCCTTAATGATCGAACATTTCCAAGCTTTTTGGAATCAAGGCGCATGGAGAAATCAGTTAGTAGGAATAGTGACCGGTTGAAAATATTCTCTGGCACAGCAAATCCCACACTTTCTAAGGAAATTGCTTGGTACATGGGTAAGGAGCTGGGAAAGATCAACATAAAGAGGTTTGCTGATGGTGAAATTTATGTTCAGTTGGAAGAGAGTGTTAGAGGGTGTGATGTTTACCTAGTGCAGCCGACCTGCCCTCCCGCTAATGAGAATCTTATGGAGCTTCTAATAATGATAGATGCTTGTCGAAGAGCATCGGCGAAAACTGTCACAGCAGTAGTTCCGTATTTTGGCTATGCCAGATCTGATAGAAAGACTCAAGGGCGTGAATCCATTGCAGCTAAACTTGTTGCAAATGTTATCACCAAAGCAGGTGCGGACCGTGTTCTTGCTTGTGATCTTCATTCTGGGCAGTCCATGGGTTACTTTGATATTCCTGTGGATCACATATATTGTCAGCCTGTGATTCTTGATTATCTTGCCAGCAAGACAATTTGTTGTAATGATTTGGTAGTGGTCTCACCTGATGTTGGAGGAGTTGCAAGAGCACGTGCTTTTGCAAAGAAGTTGTCTGATGCGCCTTTAGCCATAGTGGATAAAAGGCGTCAAGGACATAATGTTGCTGAGGTGATGAATCTGATTGGTGATGTCAAAGGAAAAGTTGCAGTCATGGTGGATGACATGATTGATACTGCTGGGACTATTACAAAAGGGGCAGCTCTGTTACATCAAGAGGGGGCCAGGGAAGTCTATGCCTGCTGTACTCATGCTGTTTTTAGCCCTCCTGCAATTGAGAGGCTGACAAGCGGCCTTTTTCAAGAGGTGATCATTACAAACACAATTCCAACGCAGGAGAAAAACTACTTCCCCCAGTTGACTGTTCTTTCAGTAGCAAACCTGCTGGGAGAAACCATCTGGCGTATACATGATGATTGTTCTGTGAGTAGCATTTTTCTGTGA 1194 44.81 MASLSLSAPSYHAESLVSRYSLRQSSFLPNESRYRFQVASVIKCDMNESLKFENGKPCVPVLNDRTFPSFLESRRMEKSVSRNSDRLKIFSGTANPTLSKEIAWYMGKELGKINIKRFADGEIYVQLEESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKTVTAVVPYFGYARSDRKTQGRESIAAKLVANVITKAGADRVLACDLHSGQSMGYFDIPVDHIYCQPVILDYLASKTICCNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTITKGAALLHQEGAREVYACCTHAVFSPPAIERLTSGLFQEVIITNTIPTQEKNYFPQLTVLSVANLLGETIWRIHDDCSVSSIFL* 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6378167 6384034 + Vvi2g603 Vvi2g603 783302

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g603 397 Hamap Putative ribose-phosphate pyrophosphokinase [prs]. 87 397 IPR037515 GO:0004749
Vvi2g603 397 Gene3D - 230 373 IPR029057 -
Vvi2g603 397 SMART Pribosyltran_N_2 87 203 - -
Vvi2g603 397 Pfam Phosphoribosyl synthetase-associated domain 288 396 IPR005946 GO:0000287|GO:0004749|GO:0009165
Vvi2g603 397 CDD PRTases_typeI 246 358 IPR000836 -
Vvi2g603 397 TIGRFAM ribP_PPkin: ribose-phosphate diphosphokinase 88 396 IPR005946 GO:0000287|GO:0004749|GO:0009165
Vvi2g603 397 Gene3D - 90 388 IPR029057 -
Vvi2g603 397 ProSitePatterns Phosphoribosyl pyrophosphate synthase signature. 211 226 IPR000842 GO:0000287|GO:0004749|GO:0009156|GO:0044249
Vvi2g603 397 SUPERFAMILY PRTase-like 152 388 IPR029057 -
Vvi2g603 397 PANTHER RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 2, CHLOROPLASTIC 47 397 - -
Vvi2g603 397 PANTHER RIBOSE-PHOSPHATE DIPHOSPHOKINASE FAMILY MEMBER 47 397 IPR005946 GO:0000287|GO:0004749|GO:0009165
Vvi2g603 397 Pfam N-terminal domain of ribose phosphate pyrophosphokinase 87 203 IPR029099 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g603 K00948 PRPS, prsA; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] - vvi:100260851 788.875
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g603 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo19g00168 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001598 1 2 2 2 2 2 5 2 2 2 2 2 4 2 2 4 2 4 2 2 1 3 2 1 2 2 2 5 3 2 71