Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g607 ATGGTTTGCACTGCTAATGATTTACAGGAGTGGAAGGATTTTCCTAAGGGACTTAGGGTCCTTCTCCTTGATGATGACACTACTTCTGCTGCTGAGATAAGATCAAAGCTTGAGGAAATGGACTATATTGTTTCTACATTCTGCAATGAGAATGAAGCTTTGTCAGCAATTTCAAGCAAACCTGAGAGCTTCCATGTTGCTATTGTAGAGGTCAGTACAGGCAACAATGGGAGTTTCAAGTTTCTCGAAACTGCTAAGGATTTACCCACCATTATGATTTCAAGCATCCATTGCCTGAGCACCATGATGAAGTGCATAGCACTCGGTGCAGTTGAGTTCCTTCGAAAACCACTGTCCGAGGACAAGCTCAGGAATATTTGGCAGCATGTAGTTCATAAGGCATTTAATGCAGGAGGGAGTGTCCTTCCTGAATCACTAAAGCCCGTCAAAGAATCTGTGGCTTCCATGCTGCAGCTCCAAATGGAAAATGAAGAACCAAGGAATGAAAGCTCAGCAGAAACACTGAATGTGTCCAATGTCCATGAAAATGACCATATGCAGTCAGCTGGAACTGATAAATACCCGGCACCTTCAACCCCACAATTAAAACAAGGAGGGAGATCATTGGATGATGGGGATTGCCTAGATCAAACTAACTGCTCAACTGAGAAAGAGAGTGGGGAGCAGGATGGGGAATCTAAATCTGTCGAAACTACATGTGGCACTTCAGTTGCTGAAGTTACTGCTCAGGTGTCTCCACCTCAAGGACTGGGCGAGAGCGTTATCAAAGAGGAAGATGATTCAGCTGATGGCTGTAAGAGTGAAAGTAATATGTCTCCTCATCCACAGAATAAAGACAGTCTCAGTGAGTTTGGTGGTGATGCTAGAAACCCCAGAAAGGCATCTGGTGTTCATAGTCCTTGTGGGACAAGAGCCAATCGGAAGAAAATGAAGGTAGACTGGACGCCTGAACTGCACAAGAAATTTGTGCAGGCAGTGGAGCAGCTGGGTGTGGATCAAGCCATTCCATCTCGAATATTAGAGCTGATGAAAGTGGAAGGCTTGACGAGGCATAATGTAGCAAGTCATCTCCAGAAATACAGAATGCATCGGAGACACATTCTGCCAAAGGAAGATGATAGAAGATGGCCTCATCAGAGAGACCCAATGCAGAGGAATTATTATCCACAGAAACCTGTCATGGCCTTCCCTCCATATCATTCCAGTCACACCCTCCCAGCTGCTCAGCTCTACCCTGTATGGGGCCAACCCAGCAGCCACCCTGCTCAGATGTGGAGCACACCTGGCTATCATACATGGCAGCCCGCAGAAAGTTGGATTTGGAAGCCTTATCCAGGGATGAATGCCGATGCATGGGGCTGCCCTGTGATGACACCAACACATACTCCATGCTCTTCCTTTCCTCAAAATCCATCTGGGTTTGATCATAATAATGGAAGTGGAATATACAACACTGGCATACCACAGAGCCCTATTGACCTTTATCCGGCAGAGGAGTTAATTGACAGGGTAGTGAAGGAGGCAATAAGCAAGCCGTGGATGCCACTGCCATTGGGCCTGAAACCGCCGGCCACCGAGAGCGTGCTGGCGGAGCTCTCCCGCCAGGGCATCTCCACCATCCCACCTCACATCAACACCCCCCGTCCCTACTGA 1674 47.55 MVCTANDLQEWKDFPKGLRVLLLDDDTTSAAEIRSKLEEMDYIVSTFCNENEALSAISSKPESFHVAIVEVSTGNNGSFKFLETAKDLPTIMISSIHCLSTMMKCIALGAVEFLRKPLSEDKLRNIWQHVVHKAFNAGGSVLPESLKPVKESVASMLQLQMENEEPRNESSAETLNVSNVHENDHMQSAGTDKYPAPSTPQLKQGGRSLDDGDCLDQTNCSTEKESGEQDGESKSVETTCGTSVAEVTAQVSPPQGLGESVIKEEDDSADGCKSESNMSPHPQNKDSLSEFGGDARNPRKASGVHSPCGTRANRKKMKVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMHRRHILPKEDDRRWPHQRDPMQRNYYPQKPVMAFPPYHSSHTLPAAQLYPVWGQPSSHPAQMWSTPGYHTWQPAESWIWKPYPGMNADAWGCPVMTPTHTPCSSFPQNPSGFDHNNGSGIYNTGIPQSPIDLYPAEELIDRVVKEAISKPWMPLPLGLKPPATESVLAELSRQGISTIPPHINTPRPY* 558
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6442237 6449184 - Vvi2g607 Vvi2g607 783306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g607 557 Gene3D - 18 137 - -
Vvi2g607 557 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 316 370 IPR006447 GO:0003677
Vvi2g607 557 Pfam Response regulator receiver domain 20 126 IPR001789 GO:0000160
Vvi2g607 557 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE APRR2 1 554 - -
Vvi2g607 557 Gene3D - 312 374 - -
Vvi2g607 557 SMART REC_2 18 127 IPR001789 GO:0000160
Vvi2g607 557 CDD REC_typeB_ARR-like 20 131 - -
Vvi2g607 557 SUPERFAMILY Homeodomain-like 315 373 IPR009057 -
Vvi2g607 557 Pfam Myb-like DNA-binding domain 319 368 IPR001005 -
Vvi2g607 557 MobiDBLite consensus disorder prediction 233 255 - -
Vvi2g607 557 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 554 IPR044825 GO:0003700|GO:0045893
Vvi2g607 557 SUPERFAMILY CheY-like 16 133 IPR011006 -
Vvi2g607 557 MobiDBLite consensus disorder prediction 185 315 - -
Vvi2g607 557 ProSiteProfiles Response regulatory domain profile. 19 131 IPR001789 GO:0000160
Vvi2g607 557 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 313 372 IPR017930 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14600 PF00072 Response_reg 6.80E-09 CL0304 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g607 - - vvi:100250547 1158.67