Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g612 ATGAACGAAGAGCAGCGCTCACTCCTCCTCAAAACCTCTTCTCGTTTCCCGCCTCCACAAGGAGTGAAGCTCTCCTATGGCACTGCTGGGTTCAGAGCGGACGCGTCGATTTTGGAATCCACGGTGTACAGAGTTGGGATATTGGCGGCTCTGAGGTCGCTCAAGACCAAATCGGTGATTGGGTTGATGATCACTGCTTCCCACAACAAGGTCTCTGACAATGGAGTGAAAATCGCGGACCCCAGTGGTGGGATGCTGACCCAAAACTGGGAGCCTTTCGCCGATGCTCTCGCTAATGCCTCCGACCCTGAAGATCTTGTTCGGTTGATAATTGAATTTGTAAAGAAGGAAAACATCCATTTTGAAGGAGCATGTCCAGCTGAAGTTTTGTTGGGGAGGGACACAAGGCCCAGTGGCGGATCTCTCCTTGAAGCTGCAAAACAAGGAATCAGTTCAATTGTTGGAGCCATTGCCCTTGACATGGGGGTTTTAACAACTCCACAACTACATTGGATGGTTCGGGCTAGGAATAAGGGCATGAAAGCTTCTGAAGTTGACTACTTTGAACAGCTCTCAAGCTCCTTCAGGTGCTTGATGGATTTGATCCCTGAAGGAAGTAAGATCAATGAGATGGGTGACAAATTGATTGTGGATGGGGCTAATGGTGTGGGTGGAGAAAAACTAGCAGGGCTAAAGAATATGTTAAACAGTCCGGTTATTGATGTTCGTAATTCTGGAAAAGAGGGAGGTGTACTTAATGAAGGAGTTGGTGCTGATTATGTGCAGAAAGAGAAGGTTGTTCCTGTTGGTTTTGGACCCAGTGATGTTGGTTTAAGGTGTGCAAGTTTGGATGGAGATGCTGATCGTCTTGTATATTTCCTTGTGCTACCAAAAGACAACAAGATTGATCTTGTTGATGGGGACAAGATATTGTCTCTATTTGCCCTTTTTGTGAAGGAACAGCTAGCTATTCTCAACACCAATGGGAATGAAAAAATTAATAACTATTATCATGCATGTCTTGGTGTTGTGCAGACAGCTTATGCAAATGGGGCATCCACAGATTACCTCAAAAAGCAGGGCCTAGAAGTTTTGTTTACTCCAACAGGAGTGAAGTATTTGCATGAGAAAGCTGCTGAGTTTGACATTGGGATATATTTTGAGGCAAATGGACATGGAACCATCTTGTTCTCTGAAGAATTTTTGTGTTGGTTGGAGGCTAGAGATAATGAACTTTCTTCCATGTCTAAAGGTTCTGAACAGCAAAAGGCAGCTTCGAGACTATTGGCAGTCAGCAAGTTGATCAATCAAGCGGTGGGAGATGCTTTAAGTGGGTTGCTTTTGGTAGAGGCTATCTTGCAACATATGGGTTGGTCCATCCATATATGGAATGCACTTTACCAGGATCTACCCAGTAGGCAACTTAAGGTTAAAGTGGTAGATAGAACTGCTATTGTTACAGCAAATGCAGAAACTGTGGTTGTGAAGCCCCCTGGCCTTCAAGAAGCCATCAATGCTGAAATTGCAAAATACCCTCAAGGCCGATCTTTTGTACGACCATCAGGTACGGAGGATATAATACGTGTATATGCTGAGGCAACAACACAGGATGCTGCAGACAGCCTTGGAAATTCAGTGGCACGACTAGTGGATAAGTTCCTTGGATTCGGCAGCTCTTCATAA 1683 44.92 MNEEQRSLLLKTSSRFPPPQGVKLSYGTAGFRADASILESTVYRVGILAALRSLKTKSVIGLMITASHNKVSDNGVKIADPSGGMLTQNWEPFADALANASDPEDLVRLIIEFVKKENIHFEGACPAEVLLGRDTRPSGGSLLEAAKQGISSIVGAIALDMGVLTTPQLHWMVRARNKGMKASEVDYFEQLSSSFRCLMDLIPEGSKINEMGDKLIVDGANGVGGEKLAGLKNMLNSPVIDVRNSGKEGGVLNEGVGADYVQKEKVVPVGFGPSDVGLRCASLDGDADRLVYFLVLPKDNKIDLVDGDKILSLFALFVKEQLAILNTNGNEKINNYYHACLGVVQTAYANGASTDYLKKQGLEVLFTPTGVKYLHEKAAEFDIGIYFEANGHGTILFSEEFLCWLEARDNELSSMSKGSEQQKAASRLLAVSKLINQAVGDALSGLLLVEAILQHMGWSIHIWNALYQDLPSRQLKVKVVDRTAIVTANAETVVVKPPGLQEAINAEIAKYPQGRSFVRPSGTEDIIRVYAEATTQDAADSLGNSVARLVDKFLGFGSSS* 561
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6513126 6524677 + Vvi2g612 Vvi2g612 783311

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g612 560 Gene3D - 2 181 - -
Vvi2g612 560 PANTHER PHOSPHOACETYLGLUCOSAMINE MUTASE 1 555 - -
Vvi2g612 560 PIRSF PAGM 1 556 IPR016657 GO:0004610
Vvi2g612 560 Gene3D - 207 302 - -
Vvi2g612 560 CDD PGM3 25 550 IPR016657 GO:0004610
Vvi2g612 560 SUPERFAMILY Phosphoglucomutase, first 3 domains 110 177 IPR016055 GO:0005975|GO:0016868
Vvi2g612 560 SUPERFAMILY Phosphoglucomutase, C-terminal domain 459 555 IPR036900 GO:0016868|GO:0071704
Vvi2g612 560 SUPERFAMILY Phosphoglucomutase, first 3 domains 53 101 IPR016055 GO:0005975|GO:0016868
Vvi2g612 560 SUPERFAMILY Phosphoglucomutase, first 3 domains 285 394 IPR016055 GO:0005975|GO:0016868
Vvi2g612 560 Pfam Phosphoglucomutase/phosphomannomutase, C-terminal domain 476 549 IPR005843 GO:0016868|GO:0071704
Vvi2g612 560 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 306 396 IPR005846 GO:0005975|GO:0016868
Vvi2g612 560 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 56 89 IPR005844 GO:0005975|GO:0016868
Vvi2g612 560 Gene3D - 471 555 - -
Vvi2g612 560 SUPERFAMILY Phosphoglucomutase, first 3 domains 187 293 IPR016055 GO:0005975|GO:0016868
Vvi2g612 560 PANTHER PHOSPHOACETYLGLUCOSAMINE MUTASE 1 555 - -
Vvi2g612 560 Gene3D - 303 399 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g612 K01836 PGM3; phosphoacetylglucosamine mutase [EC:5.4.2.3] - vvi:100259116 1096.65
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g612 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007761 1 2 3 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 35