Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g613 ATGGAAGTTGAAGGTGAAGTACTGCAATTTGAGGACTACTTCCCTTCCATGATGGAGGGTTTGGGGGCTGAGGGCTTCATGGAAGAGCTCTGCCAAGGGTTTCACTTGCTGATGGATGTGGAAAAAGGGCTCATCACTTTCGAGAGCTTGAGGAGGAGCACCTGGCAGTTAGGGTTGCAGGAGATGGGAGATGATGAGCTTGTGTGGATGCTGAGTGAGGGAGACTTGGATGGAGATGGGGCTCTCAATCAGACTGAGTTTTGCATTCTCATGTTGAGATTGAGTCCGGCAGACCAAGATTTGTGTTCCAATCAGGCTCGAACCATTCTCCAGCATCCACGCATCTTCATCCCCAACCCCTTAACAAACCACTCATCTTCATCTCCCTCTCCCTCTCCTCCATCCTCATCTCCCTCTCCGTCTTCTTCCTCCAATCTGAACCCCTCAAATCTCTCCTCCTCTGGTTCGCCCTCTCTCTCCTCGTCGGCCCCTTCGCCCCCTCCCATCTCACCGCCGGCGATATCCGGGTCGGCCCGGGTTGAAGATGGAATGGCAATGGAAAACGATGAAAAGGAGGGATGGAGTAGCGGAGAAGACATTGCTTTGCTCAATGCTTTGAAAGCGTTTCCCAAGGATGTGCCGATGAGGTGGGAGAAGATTGCAGCTGCAGTTCCGGGAAGGTCAAAAGCGGCTTGTATGAAGAGATTTTCTGAATTGAAAAAGGGTTTTCGGAACTCCAAGGCTGCTGCTGAGGATCATAAATTGGTTTTGCAACCTTTAATAGTTTTGATTTACAGGATGAATATCAATGTTTGTTTCTTGCTGTTTCAGTGA 834 49.76 MEVEGEVLQFEDYFPSMMEGLGAEGFMEELCQGFHLLMDVEKGLITFESLRRSTWQLGLQEMGDDELVWMLSEGDLDGDGALNQTEFCILMLRLSPADQDLCSNQARTILQHPRIFIPNPLTNHSSSSPSPSPPSSSPSPSSSSNLNPSNLSSSGSPSLSSSAPSPPPISPPAISGSARVEDGMAMENDEKEGWSSGEDIALLNALKAFPKDVPMRWEKIAAAVPGRSKAACMKRFSELKKGFRNSKAAAEDHKLVLQPLIVLIYRMNINVCFLLFQ* 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6526980 6534000 - Vvi2g613 Vvi2g613 783312

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g613 277 MobiDBLite consensus disorder prediction 118 177 - -
Vvi2g613 277 CDD SANT 194 240 IPR001005 -
Vvi2g613 277 ProSiteProfiles EF-hand calcium-binding domain profile. 62 97 IPR002048 GO:0005509
Vvi2g613 277 ProSiteProfiles SANT domain profile. 189 244 IPR017884 -
Vvi2g613 277 PANTHER CALCIUM-BINDING PROTEIN KIC 1 99 IPR044205 GO:0005509
Vvi2g613 277 ProSiteProfiles Myb-like domain profile. 186 240 IPR001005 -
Vvi2g613 277 SUPERFAMILY EF-hand 27 95 IPR011992 -
Vvi2g613 277 MobiDBLite consensus disorder prediction 139 160 - -
Vvi2g613 277 Gene3D - 186 254 - -
Vvi2g613 277 PANTHER CALCIUM-BINDING PROTEIN PBP1-LIKE 1 99 - -
Vvi2g613 277 SMART sant 190 242 IPR001005 -
Vvi2g613 277 Pfam Myb-like DNA-binding domain 193 238 IPR001005 -
Vvi2g613 277 SUPERFAMILY Homeodomain-like 191 241 IPR009057 -
Vvi2g613 277 Pfam EF-hand domain pair 41 93 IPR002048 GO:0005509
Vvi2g613 277 ProSitePatterns EF-hand calcium-binding domain. 75 87 IPR018247 -
Vvi2g613 277 Gene3D - 8 112 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g613 K24345 KIC; calcium-binding protein KIC and related proteins - vvi:100260800 199.134
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g613 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bhi05g00527 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000541 9 3 5 9 4 3 3 3 3 2 3 3 3 2 3 4 3 8 2 3 3 3 2 3 2 4 3 2 3 3 106
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14601 PF13833 EF-hand_8 3.30E-14 CL0220 Vvi TF