Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g618 ATGTACGACAAATTCGATAATACCTATCAGGCTACAATTGGTATTGATTTCCTATCAAAGACCATGTATCTTGAAGATCGAACCGTTCGTCTGCAGTTGTGGGATACAGCCGGGCAGGAAAGATTCAGGAGTCTCATTCCGAGCTACATTAGGGATTCATCTGTTGCAGTCATTGTATATGATGTTGCAAGTCGGCAATCTTTCCTAAACACTTCAAAGTGGATTGAAGAGGTTCGCACTGAGAGAGGTAGTGATGTTATTATCGTCCTTGTTGGAAACAAGACTGACCTTGTGGAGAAAAGGCAAGTCTCAATAGAGGAAGGAGAAGCCAAAGCTCGTGAACTTAACGTCATGTTCATTGAAACAAGTGCCAAAGCTGGCTTCAATATAAAGGCACTGTTTCGGAAAATTGCAGCAGCTTTACCAGGAATGGAAACACTTTCTTCAGCAAAGCAAGAAGACATGGTTGATGTGAATCTGAAGTCGTCAAGTGGCAGTGCATCACAGTCCCAAACTCAGGCACGTGGATGCTCTTGTTGA 540 43.15 MYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTSKWIEEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSAKQEDMVDVNLKSSSGSASQSQTQARGCSC* 180
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6621101 6629838 + Vvi2g618 Vvi2g618 783317

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g618 179 PRINTS Transforming protein P21 ras signature 4 20 - -
Vvi2g618 179 PRINTS Transforming protein P21 ras signature 22 44 - -
Vvi2g618 179 PRINTS Transforming protein P21 ras signature 84 97 - -
Vvi2g618 179 PRINTS Transforming protein P21 ras signature 119 141 - -
Vvi2g618 179 CDD Rab6 1 141 - -
Vvi2g618 179 Pfam Ras family 2 140 IPR001806 GO:0003924|GO:0005525
Vvi2g618 179 TIGRFAM small_GTP: small GTP-binding protein domain 4 137 IPR005225 GO:0005525
Vvi2g618 179 ProSiteProfiles small GTPase Rab1 family profile. 1 179 - -
Vvi2g618 179 MobiDBLite consensus disorder prediction 160 179 - -
Vvi2g618 179 PANTHER DRAB5-RELATED 1 179 - -
Vvi2g618 179 SMART ras_sub_4 1 144 - -
Vvi2g618 179 ProSiteProfiles small GTPase Ras family profile. 1 179 IPR001806 GO:0003924|GO:0005525
Vvi2g618 179 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 149 IPR027417 -
Vvi2g618 179 SMART ran_sub_2 1 178 - -
Vvi2g618 179 Gene3D - 1 179 IPR027417 -
Vvi2g618 179 ProSiteProfiles small GTPase Rho family profile. 1 150 - -
Vvi2g618 179 PANTHER GTP-BINDING PROTEIN RAB6 1 179 - -
Vvi2g618 179 SMART rab_sub_5 1 144 - -
Vvi2g618 179 SMART rho_sub_3 5 143 IPR001806 GO:0003924|GO:0005525
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g618 K07893 RAB6A; Ras-related protein Rab-6A - vvi:100242004 342.043
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi2g618 Vvi15g257 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g618 . . . . . . . . . . Cma02g01585 . Car02g01349 . . . . . . . . . . . . . . . . . . Cone8ag0448 Cone12ag0437 . . . . Chy04g00049 . . . . . . . . . . Cmo02g01628 . . . . . . . . . . . . . . Cla09g01177 Cam09g1242 Cec09g1258 . . . Cre09g1206 . Csa03g04651 . Cme04g00063
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001834 3 2 2 3 3 1 4 2 1 1 1 1 1 2 2 4 1 5 3 2 2 2 2 2 2 1 2 4 3 2 66